Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G380000.1 | Wheat | nucleus | 85.5 | 85.93 |
| TraesCS1D01G367700.1 | Wheat | nucleus | 85.25 | 85.04 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 83.75 | 84.81 |
| Os05t0541400-00 | Rice | nucleus | 53.25 | 51.2 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 20.75 | 49.7 |
| EES18589 | Sorghum | nucleus | 43.5 | 43.39 |
| Zm00001d038863_P001 | Maize | nucleus | 42.75 | 43.18 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 6.25 | 41.67 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 39.75 | 39.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.25 | 38.46 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 14.5 | 31.18 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 16.75 | 30.18 |
| CDY62045 | Canola | nucleus | 25.25 | 30.15 |
| Bra031275.1-P | Field mustard | nucleus | 25.0 | 30.12 |
| CDY51449 | Canola | nucleus | 25.0 | 30.12 |
| Bra001826.1-P | Field mustard | nucleus | 23.75 | 29.32 |
| CDY32423 | Canola | nucleus | 23.75 | 28.79 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 16.5 | 27.73 |
| Solyc03g121240.1.1 | Tomato | nucleus | 26.25 | 27.63 |
| CDY48884 | Canola | nucleus | 23.0 | 27.46 |
| PGSC0003DMT400006453 | Potato | nucleus | 26.5 | 27.46 |
| AT3G21330.1 | Thale cress | nucleus | 24.5 | 26.27 |
| KRH23349 | Soybean | nucleus | 28.5 | 25.33 |
| KRH09982 | Soybean | nucleus | 27.75 | 24.94 |
| KRH47179 | Soybean | nucleus | 26.75 | 24.83 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 28.75 | 24.42 |
| KRH44227 | Soybean | nucleus | 27.0 | 24.38 |
| HORVU3Hr1G048770.1 | Barley | plastid | 28.75 | 23.86 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 10.5 | 20.0 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 16.5 | 19.47 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 12.75 | 16.35 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 12.0 | 16.05 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 11.0 | 15.07 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 11.75 | 14.29 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 10.75 | 12.99 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 6.75 | 8.01 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A287GEN5 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0046983 | GO:GO:0048586 | GO:GO:0048587 |
| InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU1Hr1G079450 | EnsemblPlants:HORVU1Hr1G079450.1 | InterPro:IPR011598 | InterPro:IPR036638 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF309 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000B4712ED | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:523090737..523092860
Molecular Weight (calculated)
41342.0 Da
IEP (calculated)
7.606
GRAVY (calculated)
-0.400
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAFGWSTQP TATVPSCPSD DALLAAFLGA GSFEDLRSAG AGDGTVSSDA YHGGLDLTSC HSDLSLLRCQ DGPTLPCHGD ASSHAFLDSV GCLFPALAGA
101: HDGLHDRFAF VPDEAARAAG SNAAFSGYST TTGGGGGNVS SGESNTYGGG GHETEVASPP CAVSRRAQQI TQLAPPPTKR NKVPEKHLAP AASLTAAVTV
201: EATERWGTNR AASPTTSIAF GHSGGRRGYE PDTEAIAQVK EMIYRAAAMR PLPSLTGASA GDPTHEPSPS KPRRRKNVRI SSDPQTVAAR LRREKVSERL
301: RALQRLVPGG SKMDTASMLD EAASYLKFLK SQLAALEALG GGGGGSADDD GRYSSLQRYT GRNFNPSSHG IGGAGSTVLS FGRDGVAGYV KSSRNMNMQL
101: HDGLHDRFAF VPDEAARAAG SNAAFSGYST TTGGGGGNVS SGESNTYGGG GHETEVASPP CAVSRRAQQI TQLAPPPTKR NKVPEKHLAP AASLTAAVTV
201: EATERWGTNR AASPTTSIAF GHSGGRRGYE PDTEAIAQVK EMIYRAAAMR PLPSLTGASA GDPTHEPSPS KPRRRKNVRI SSDPQTVAAR LRREKVSERL
301: RALQRLVPGG SKMDTASMLD EAASYLKFLK SQLAALEALG GGGGGSADDD GRYSSLQRYT GRNFNPSSHG IGGAGSTVLS FGRDGVAGYV KSSRNMNMQL
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.