Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G048120.8 | |
| HORVU6Hr1G088020.4 | |
| HORVU7Hr1G026560.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00120.1 | HORVU5Hr1G048120.8 | AT2G38270.1 | 21798944 |
| AT5G09750.1 | HORVU6Hr1G088020.4 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | HORVU7Hr1G026560.2 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G319600.1 | Wheat | nucleus | 80.24 | 85.8 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 80.83 | 85.36 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 78.76 | 85.3 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 26.55 | 73.77 |
| Zm00001d049721_P001 | Maize | nucleus | 55.75 | 65.85 |
| Os08t0108500-01 | Rice | nucleus | 57.23 | 63.4 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 30.97 | 62.5 |
| Zm00001d035027_P001 | Maize | nucleus | 61.65 | 62.39 |
| GSMUA_Achr11P... | Banana | nucleus | 34.51 | 61.26 |
| EES14382 | Sorghum | nucleus | 61.95 | 60.34 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 32.74 | 56.06 |
| Bra028620.1-P | Field mustard | nucleus | 32.45 | 51.4 |
| CDX85799 | Canola | nucleus | 32.45 | 51.4 |
| CDY64847 | Canola | nucleus | 32.45 | 51.16 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 33.04 | 50.22 |
| AT5G09750.1 | Thale cress | nucleus | 31.86 | 48.21 |
| CDY21597 | Canola | nucleus | 31.27 | 47.53 |
| CDX91916 | Canola | cytosol | 23.89 | 45.51 |
| CDX74329 | Canola | cytosol | 23.3 | 43.41 |
| KRH53884 | Soybean | nucleus | 29.79 | 43.16 |
| Bra000979.1-P | Field mustard | cytosol | 23.3 | 42.7 |
| KRH59559 | Soybean | nucleus | 33.33 | 42.48 |
| AT4G00120.1 | Thale cress | nucleus | 24.78 | 42.42 |
| KRH43543 | Soybean | nucleus | 33.63 | 42.07 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 7.37 | 41.67 |
| KRH64060 | Soybean | nucleus | 29.79 | 41.56 |
| PGSC0003DMT400073760 | Potato | nucleus | 29.79 | 38.55 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 24.19 | 36.94 |
| Solyc11g005780.1.1 | Tomato | nucleus | 29.5 | 35.34 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 23.89 | 34.03 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 16.81 | 30.65 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 14.45 | 23.33 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 19.76 | 16.54 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 19.47 | 16.5 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 12.39 | 14.38 |
| HORVU3Hr1G048770.1 | Barley | plastid | 20.35 | 14.32 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 12.39 | 13.46 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 12.68 | 13.07 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 10.91 | 12.37 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 10.91 | 11.18 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 5.9 | 5.93 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G077270.3 | EnsemblPlantsGene:HORVU7Hr1G077270 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF294 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B46211A | UniProt:A0A287WZD9 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chrchr7H:-:452946952..452948028
Molecular Weight (calculated)
34946.0 Da
IEP (calculated)
7.354
GRAVY (calculated)
-0.858
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: GQYDPQLEQQ QLLGLGHEPR QPPPPSPLRP PHPNSAGATX XXXXXXXXXX XXXXXXXXXX XPPPPPLSFH LHHPPPPPHQ HPHHHQQHLA IDPSPSSSLF
101: PPPPHHHHHH LHHLDLAVDP HRHQHDYQRD QHPEEMQQRP PPAMEDSSHQ LHHQDAVDEA EEELGAMKEM MYRIAAMQPV DIDPATIKKP RRRNVRISED
201: PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAI RYIKFLKRQV QDLQHQPAPH QQQHYPGGGG SGGAGPSSTA AVAGRPAFLP LGAGSLIDWA
301: GLTRQVDVHG PTSSSSSSSM GGALGFGFST GGQSSHGMH
101: PPPPHHHHHH LHHLDLAVDP HRHQHDYQRD QHPEEMQQRP PPAMEDSSHQ LHHQDAVDEA EEELGAMKEM MYRIAAMQPV DIDPATIKKP RRRNVRISED
201: PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAI RYIKFLKRQV QDLQHQPAPH QQQHYPGGGG SGGAGPSSTA AVAGRPAFLP LGAGSLIDWA
301: GLTRQVDVHG PTSSSSSSSM GGALGFGFST GGQSSHGMH
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.