Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91916 | Canola | cytosol | 64.14 | 71.35 |
| CDX74329 | Canola | cytosol | 57.07 | 62.09 |
| Bra000979.1-P | Field mustard | cytosol | 57.07 | 61.08 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 37.37 | 60.66 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 37.37 | 44.05 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 42.42 | 42.42 |
| GSMUA_Achr11P... | Banana | nucleus | 40.4 | 41.88 |
| AT5G09750.1 | Thale cress | nucleus | 41.92 | 37.05 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 39.39 | 34.98 |
| KRH53884 | Soybean | nucleus | 40.91 | 34.62 |
| KRH64060 | Soybean | nucleus | 41.41 | 33.74 |
| AT3G50330.1 | Thale cress | nucleus | 36.36 | 31.17 |
| PGSC0003DMT400073760 | Potato | nucleus | 39.9 | 30.15 |
| AT5G67060.1 | Thale cress | nucleus | 36.36 | 29.88 |
| Os08t0108500-01 | Rice | nucleus | 43.94 | 28.43 |
| Solyc11g005780.1.1 | Tomato | nucleus | 40.4 | 28.27 |
| Zm00001d049721_P001 | Maize | nucleus | 39.9 | 27.53 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 42.93 | 27.16 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 42.42 | 26.5 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 42.93 | 26.48 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 21.72 | 25.15 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 42.42 | 24.78 |
| Zm00001d035027_P001 | Maize | nucleus | 41.41 | 24.48 |
| EES14382 | Sorghum | nucleus | 41.92 | 23.85 |
| AT3G21330.1 | Thale cress | nucleus | 32.32 | 17.16 |
| AT5G43175.1 | Thale cress | nucleus | 17.68 | 15.7 |
| AT1G27740.1 | Thale cress | nucleus | 18.69 | 14.34 |
| AT2G14760.3 | Thale cress | nucleus | 21.21 | 12.32 |
| AT4G33880.1 | Thale cress | nucleus | 21.21 | 11.93 |
| AT1G66470.1 | Thale cress | nucleus | 17.17 | 11.41 |
| AT5G37800.1 | Thale cress | nucleus | 16.16 | 10.42 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:827911 | ProteinID:AAC19297.1 | ProteinID:AEE81825.1 | EMBL:AF488578 |
| ArrayExpress:AT4G00120 | EnsemblPlantsGene:AT4G00120 | RefSeq:AT4G00120 | TAIR:AT4G00120 | RefSeq:AT4G00120-TAIR-G | EnsemblPlants:AT4G00120.1 |
| TAIR:AT4G00120.1 | Unigene:At.34598 | EMBL:BT029443 | ProteinID:CAB80770.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010197 | GO:GO:0016043 |
| GO:GO:0030154 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | Symbol:IND1 | InterPro:IPR011598 | InterPro:IPR036638 |
| RefSeq:NP_191923.1 | UniProt:O81313 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0000046563 | InterPro:bHLH_dom | SEG:seg | : |
Description
INDTranscription factor IND [Source:UniProtKB/Swiss-Prot;Acc:O81313]
Coordinates
chr4:-:41665..43197
Molecular Weight (calculated)
22950.7 Da
IEP (calculated)
7.691
GRAVY (calculated)
-0.787
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.