Factsheet for GSMUA_Achr11P19510_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P10450_001
GSMUA_Achr5P14210_001
GSMUA_Achr6P03790_001
GSMUA_Achr7P08700_001
GSMUA_Achr7P20810_001
GSMUA_Achr8P15670_001
GSMUA_Achr9P11300_001
GSMUA_Achr9P13880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00120.1	GSMUA_Achr5P14210_001	AT2G38270.1	21798944
AT4G00120.1	GSMUA_Achr1P10450_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr6P03790_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr7P08700_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr9P13880_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_AchrUn_...	AT3G21150.1	21798944
AT5G09750.1	GSMUA_Achr10P...	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr7P20810_001	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr8P15670_001	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr9P11300_001	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18580_001	Banana	cytosol	46.07	72.13
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	49.74	56.55
GSMUA_Achr5P01290_001	Banana	nucleus	55.5	53.54
GSMUA_Achr8P23350_001	Banana	nucleus	38.22	47.1
VIT_04s0044g01040.t01	Wine grape	nucleus	50.79	43.5
Bra028620.1-P	Field mustard	nucleus	48.17	42.99
CDX85799	Canola	nucleus	48.17	42.99
CDY64847	Canola	nucleus	48.17	42.79
CDX74329	Canola	cytosol	39.79	41.76
CDX91916	Canola	cytosol	38.74	41.57
AT5G09750.1	Thale cress	nucleus	48.69	41.52
GSMUA_Achr9P29130_001	Banana	nucleus	32.98	41.18
Bra000979.1-P	Field mustard	cytosol	39.79	41.08
KRH53884	Soybean	nucleus	50.26	41.03
AT4G00120.1	Thale cress	nucleus	41.88	40.4
CDY21597	Canola	nucleus	47.12	40.36
Zm00001d049721_P001	Maize	nucleus	58.64	39.02
KRH64060	Soybean	nucleus	49.21	38.68
Os08t0108500-01	Rice	nucleus	61.26	38.24
TraesCS7A01G323000.1	Wheat	nucleus	61.26	37.38
TraesCS7D01G319600.1	Wheat	nucleus	61.26	36.91
KRH59559	Soybean	nucleus	50.79	36.47
TraesCS7B01G223900.1	Wheat	nucleus	61.26	36.45
GSMUA_Achr1P14400_001	Banana	nucleus	31.41	35.93
KRH43543	Soybean	nucleus	50.79	35.79
Zm00001d035027_P001	Maize	nucleus	61.78	35.22
PGSC0003DMT400073760	Potato	nucleus	47.64	34.73
HORVU7Hr1G077270.3	Barley	cytosol	61.26	34.51
EES14382	Sorghum	nucleus	60.73	33.33
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	20.94	33.06
Solyc11g005780.1.1	Tomato	nucleus	48.69	32.86
GSMUA_Achr6P16890_001	Banana	nucleus	22.51	31.62
GSMUA_Achr9P15380_001	Banana	nucleus	38.74	30.2
GSMUA_Achr10P...	Banana	nucleus	38.22	30.17
GSMUA_Achr4P23240_001	Banana	nucleus	20.94	27.4
GSMUA_Achr4P18820_001	Banana	nucleus	25.65	23.9
GSMUA_AchrUn_...	Banana	nucleus	32.46	22.71
GSMUA_Achr3P25950_001	Banana	nucleus	37.17	20.17
GSMUA_Achr8P24970_001	Banana	nucleus	35.08	19.25
GSMUA_AchrUn_...	Banana	nucleus	25.65	16.39
GSMUA_Achr9P09600_001	Banana	nucleus	21.99	15.22
GSMUA_Achr6P07760_001	Banana	nucleus	22.51	14.98
GSMUA_Achr2P17130_001	Banana	nucleus	23.04	13.92
GSMUA_Achr3P18870_001	Banana	nucleus	25.13	13.87
GSMUA_Achr10P...	Banana	nucleus	20.42	13.09
GSMUA_Achr2P22860_001	Banana	nucleus	20.94	12.42
GSMUA_Achr6P09370_001	Banana	nucleus	20.42	11.5

Protein Annotations

EnsemblPlants:GSMUA_Achr11P19510_001	EnsemblPlants:GSMUA_Achr11T19510_001	EnsemblPlantsGene:GSMUA_Achr11G19510_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF125	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029671D6	UniProt:M0RTN1	MapMan:15.5.32	:

Description

Predicted protein (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G19510_001]

Coordinates

chr11:+:20612007..20612582

Molecular Weight (calculated)

21169.2 Da

IEP (calculated)

7.098

GRAVY (calculated)

-0.520

Length

191 amino acids

Sequence
(BLAST)

001: MGSQFLSNYI PLELPFHAHI HPPSFPRRGM EGDHEAEEEE ALGAVKEMMY RIAAMQPVDI DPSTIKKPRR RNVRISDDPQ SVAARLRRER ISERIRVLQR
101: LVPGGTKMDT TSMLDEAIRY VKFLKRQVQE LQASPQSHAV HVGAVVDGNP VAGAEWSHAS SPSSSSSAMG APPPPVLEFG FDEQGAHHPV H

Best Arabidopsis Sequence Match ( AT5G09750.1 )
(BLAST)

001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI

Arabidopsis Description

HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.