Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P10450_001 | Banana | cytosol | 52.54 | 64.85 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 41.36 | 49.8 |
| GSMUA_Achr9P13880_001 | Banana | nucleus | 19.66 | 39.46 |
| GSMUA_Achr6P03790_001 | Banana | nucleus | 24.41 | 32.14 |
| Solyc06g063280.1.1 | Tomato | nucleus | 20.68 | 23.37 |
| VIT_09s0054g00530.t01 | Wine grape | cytosol, nucleus, plastid | 20.34 | 23.08 |
| AT3G21150.1 | Thale cress | cytosol | 16.27 | 21.33 |
| PGSC0003DMT400068177 | Potato | nucleus | 18.64 | 20.99 |
| CDY50075 | Canola | nucleus | 15.59 | 20.63 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 12.88 | 20.32 |
| CDY19582 | Canola | cytosol | 14.92 | 19.91 |
| CDY32408 | Canola | cytosol | 14.58 | 19.55 |
| Bra031255.1-P | Field mustard | cytosol | 14.58 | 19.46 |
| GSMUA_Achr11P... | Banana | nucleus | 14.58 | 19.37 |
| Bra001815.1-P | Field mustard | cytosol | 14.92 | 19.13 |
| CDX82214 | Canola | cytosol | 14.92 | 19.13 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 12.54 | 17.79 |
| KRH44613 | Soybean | nucleus | 14.24 | 17.43 |
| KRH47291 | Soybean | nucleus | 13.56 | 16.46 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 15.59 | 12.81 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP05050_001 | EnsemblPlants:GSMUA_AchrUn_randomT05050_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG05050_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF22 | SEG:seg | SMART:SM00336 | UniParc:UPI000294A49D | UniProt:M0U6G7 | MapMan:35.2 |
Description
B-box zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05050_001]
Coordinates
chrchrUn_random:+:19852049..19852936
Molecular Weight (calculated)
31407.5 Da
IEP (calculated)
9.042
GRAVY (calculated)
-0.184
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MFIYTDIKHY SFVLPPNASS SREITSFPQE AKLSLPNTTP PPCKTFPPPP SAPGVSEMKQ RPACALCGGE AAVYCEPDAA FLCWACDASV HGANFLVARH
101: VRQATCAACH SLDAGCRVSG AGPQRVRPLC ASCDPDPAAP PSHSEASSSS SSSLSTSEST AAPRAKKPAD PRRTATKRRR GVVEERVEAV LLGWSRRMGL
201: RRGRRCVEAA ARVVGLHQET TAALPLPVAL AAALWFAVKL REQDAAAERG SWVALRRLEA CSGVPARLIA AAASRIARVA EREVRVAKEG WAECT
101: VRQATCAACH SLDAGCRVSG AGPQRVRPLC ASCDPDPAAP PSHSEASSSS SSSLSTSEST AAPRAKKPAD PRRTATKRRR GVVEERVEAV LLGWSRRMGL
201: RRGRRCVEAA ARVVGLHQET TAALPLPVAL AAALWFAVKL REQDAAAERG SWVALRRLEA CSGVPARLIA AAASRIARVA EREVRVAKEG WAECT
001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV
Arabidopsis Description
BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.