Factsheet for GSMUA_Achr10P26880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P06040_001
GSMUA_Achr3P10380_001
GSMUA_Achr5P23980_001
GSMUA_Achr9P18270_001
GSMUA_Achr9P28200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	GSMUA_Achr3P06040_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr3P10380_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr5P23980_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr9P18270_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr9P28200_001	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04231	Canola	mitochondrion	7.41	59.09
KRH13468	Soybean	cytosol	14.24	50.51
GSMUA_Achr4P30670_001	Banana	nucleus	52.42	50.14
GSMUA_Achr7P18710_001	Banana	plastid	44.73	41.42
VIT_01s0011g03520.t01	Wine grape	nucleus	49.0	39.81
CDX77359	Canola	nucleus	17.95	39.38
GSMUA_Achr10P...	Banana	nucleus	42.73	39.27
CDY03851	Canola	nucleus	41.6	39.25
KRH35955	Soybean	nucleus	46.72	39.14
KRG90815	Soybean	nucleus	45.87	38.52
GSMUA_Achr7P12560_001	Banana	nucleus	36.47	38.44
CDY65591	Canola	nucleus	37.89	38.22
CDY67920	Canola	nucleus	37.89	38.22
Solyc04g007210.2.1	Tomato	nucleus	46.15	37.85
CDY51133	Canola	nucleus	40.17	37.4
CDY53119	Canola	nucleus	39.89	37.23
TraesCS7A01G206200.1	Wheat	nucleus	45.58	37.04
TraesCS7B01G113400.1	Wheat	nucleus	45.58	37.04
TraesCS7D01G209000.1	Wheat	nucleus	45.58	37.04
CDY24402	Canola	nucleus	38.75	36.86
Bra012475.1-P	Field mustard	nucleus	42.73	36.76
AT1G25440.1	Thale cress	nucleus	43.59	36.69
Solyc05g009310.2.1	Tomato	nucleus	45.01	36.16
Zm00001d037327_P001	Maize	mitochondrion, nucleus	45.87	35.62
PGSC0003DMT400037755	Potato	nucleus	45.3	35.57
Os06t0264200-00	Rice	plastid	48.72	35.55
TraesCS6B01G323400.1	Wheat	nucleus	43.3	35.51
TraesCS6D01G274100.1	Wheat	nucleus	43.87	35.48
AT1G68520.1	Thale cress	nucleus	41.03	35.47
Bra024750.1-P	Field mustard	nucleus	41.6	35.27
CDX81527	Canola	nucleus	40.17	35.16
TraesCS6A01G293200.1	Wheat	nucleus	42.45	34.98
CDY44890	Canola	nucleus	39.89	34.91
Zm00001d045661_P001	Maize	nucleus	44.73	34.43
Bra033925.1-P	Field mustard	nucleus	39.32	34.41
Os02t0731700-02	Rice	nucleus	44.16	34.29
EER88191	Sorghum	nucleus, plastid	45.87	33.97
Zm00001d017939_P001	Maize	nucleus	43.59	32.9
CDY04230	Canola	nucleus	21.08	32.17
EES05581	Sorghum	nucleus, plastid	44.73	32.17
CDY36106	Canola	nucleus	33.9	30.99
HORVU6Hr1G073170.1	Barley	nucleus	43.59	30.72
Bra010994.1-P	Field mustard	nucleus	34.47	29.73
Bra004035.1-P	Field mustard	nucleus	38.18	28.27
GSMUA_Achr11P...	Banana	nucleus	14.24	26.45
PGSC0003DMT400020030	Potato	nucleus	41.88	26.11
GSMUA_Achr10P...	Banana	nucleus	18.23	22.22
GSMUA_Achr6P01780_001	Banana	nucleus	19.09	16.34
GSMUA_Achr7P19660_001	Banana	mitochondrion	20.23	16.03
GSMUA_Achr10P...	Banana	nucleus	10.83	11.8

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr10G26880_001
EnsemblPlants:GSMUA_Achr10P26880_001	EnsemblPlants:GSMUA_Achr10T26880_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0RLR2	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	SMART:SM00336
UniParc:UPI000296AE12	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 16 [Source:GMGC_GENE;Acc:GSMUA_Achr10G26880_001]

Coordinates

chr10:+:30215003..30216592

Molecular Weight (calculated)

39128.5 Da

IEP (calculated)

8.269

GRAVY (calculated)

-0.561

Length

351 amino acids

Sequence
(BLAST)

001: MGCTEKQRPA SAVGAKTARP CDGCLRRRAR WFCEADDAFL CQACDVSVHS ANPLARRHRR VRLKTASFSG FLSTTEDGLG DHATPAWLHG CKRKPRTPRG
101: KPGLLEQAHV SAVPTADGLG GFHASDLELE QFASDMEVLL GSGLDNDSFC IDGLGWMNGT VEDDSDGQVK VEVDLDVART SSNFRMEMDL PKWKLDLGFD
201: SQMMAVEVDE HKPLQQAETA SDNYRAEAAA KRKMILRLDY EAVIAACSSN VLSLWIDGVR PDFDPNDSWP DVPAMAGGAA AMKEMHYQQE VAHAADEGRE
301: ARVSRYREKR RRRLFSKKIR YEVRKLNAEK RPRMKGRFVK RPAFPAALAC R

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.