Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G274100.1 | Wheat | nucleus | 95.31 | 93.55 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 93.66 | 93.22 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 91.08 | 77.91 |
| Os02t0731700-02 | Rice | nucleus | 67.84 | 63.94 |
| CDY04231 | Canola | mitochondrion | 6.57 | 63.64 |
| EES05581 | Sorghum | nucleus, plastid | 66.43 | 57.99 |
| Zm00001d017939_P001 | Maize | nucleus | 63.15 | 57.85 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 55.16 | 54.4 |
| KRH13468 | Soybean | cytosol | 11.27 | 48.48 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 40.85 | 47.41 |
| GSMUA_Achr10P... | Banana | nucleus | 34.98 | 42.45 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 42.02 | 41.44 |
| CDY65591 | Canola | nucleus | 32.86 | 40.23 |
| CDY67920 | Canola | nucleus | 32.86 | 40.23 |
| CDY03851 | Canola | nucleus | 34.74 | 39.78 |
| KRH35955 | Soybean | nucleus | 38.97 | 39.62 |
| Solyc04g007210.2.1 | Tomato | nucleus | 39.2 | 39.02 |
| KRG90815 | Soybean | nucleus | 38.26 | 39.0 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 36.85 | 38.29 |
| CDY44890 | Canola | nucleus | 35.45 | 37.66 |
| Bra033925.1-P | Field mustard | nucleus | 35.45 | 37.66 |
| CDY53119 | Canola | nucleus | 33.1 | 37.5 |
| CDX77359 | Canola | nucleus | 14.08 | 37.5 |
| AT1G25440.1 | Thale cress | nucleus | 36.62 | 37.41 |
| CDY24402 | Canola | nucleus | 32.39 | 37.4 |
| CDX81527 | Canola | nucleus | 34.98 | 37.16 |
| CDY51133 | Canola | nucleus | 32.86 | 37.14 |
| Solyc05g009310.2.1 | Tomato | nucleus | 38.03 | 37.07 |
| Bra012475.1-P | Field mustard | nucleus | 35.45 | 37.01 |
| AT1G68520.1 | Thale cress | nucleus | 35.21 | 36.95 |
| Bra024750.1-P | Field mustard | nucleus | 35.68 | 36.72 |
| PGSC0003DMT400037755 | Potato | nucleus | 38.5 | 36.69 |
| CDY04230 | Canola | nucleus | 19.25 | 35.65 |
| CDY36106 | Canola | nucleus | 28.17 | 31.25 |
| Bra004035.1-P | Field mustard | nucleus | 34.27 | 30.8 |
| Bra010994.1-P | Field mustard | nucleus | 28.87 | 30.22 |
| PGSC0003DMT400020030 | Potato | nucleus | 35.21 | 26.64 |
| TraesCS7A01G314300.1 | Wheat | nucleus | 14.32 | 20.47 |
| TraesCS6A01G118000.1 | Wheat | plastid | 19.48 | 16.87 |
| TraesCS7A01G422200.1 | Wheat | nucleus, plastid | 17.37 | 16.16 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G293200.1 | EnsemblPlantsGene:TraesCS6A01G293200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF22 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : |
Description
No Description!
Coordinates
chr6A:-:524718513..524719864
Molecular Weight (calculated)
46499.4 Da
IEP (calculated)
7.240
GRAVY (calculated)
-0.713
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSDQKAAG GAVGGKAARA CDGCMRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER LRLCATSPLP AERGKAVKES SGATTSKCLD VAPAWPRRKA
101: RTRRPPVKSV GQLLSRRLVV PEVGAGESST SDERRAPEEE QLLYRVPVFD PALAEFCSPP PIDGSRHSED VEGAVEDAKE LTAEQSPVQE LPDCFASFGP
201: TDADLREFAA DMEALLGQGL DDGKELEDSF YMEAPGLISP PGEHGGRVKV EADGGLVSRS NGVLASGHDL KREFNGSPPT LVDDDDSFEH KTSSASNGDG
301: VDDAQFLKRS LDLRLNYEAV MESWGSSPWT DGRRPPGQLD DLLLHDHAVH GTWTAGGGGR HGDAAWPPRP RTDEWREARV SRYREKRRTR LFAKKIRYEV
401: RKLNAEKRPR MKGRFVKRTG AACAVT
101: RTRRPPVKSV GQLLSRRLVV PEVGAGESST SDERRAPEEE QLLYRVPVFD PALAEFCSPP PIDGSRHSED VEGAVEDAKE LTAEQSPVQE LPDCFASFGP
201: TDADLREFAA DMEALLGQGL DDGKELEDSF YMEAPGLISP PGEHGGRVKV EADGGLVSRS NGVLASGHDL KREFNGSPPT LVDDDDSFEH KTSSASNGDG
301: VDDAQFLKRS LDLRLNYEAV MESWGSSPWT DGRRPPGQLD DLLLHDHAVH GTWTAGGGGR HGDAAWPPRP RTDEWREARV SRYREKRRTR LFAKKIRYEV
401: RKLNAEKRPR MKGRFVKRTG AACAVT
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.