Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68520.1 | CDY24507 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY30923 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY69854 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY70563 | AT1G60010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07383 | Canola | cytosol | 79.13 | 79.13 |
| CDX77359 | Canola | nucleus | 34.78 | 50.0 |
| CDY44890 | Canola | nucleus | 77.83 | 44.64 |
| CDX81527 | Canola | nucleus | 77.39 | 44.39 |
| AT1G68520.1 | Thale cress | nucleus | 77.39 | 43.84 |
| Bra004035.1-P | Field mustard | nucleus | 85.65 | 41.56 |
| CDY67920 | Canola | nucleus | 57.39 | 37.93 |
| CDY65591 | Canola | nucleus | 56.96 | 37.64 |
| CDY03851 | Canola | nucleus | 55.65 | 34.41 |
| CDY53119 | Canola | nucleus | 56.09 | 34.31 |
| CDY51133 | Canola | nucleus | 56.09 | 34.22 |
| CDX70561 | Canola | nucleus | 19.13 | 29.14 |
| CDY24402 | Canola | nucleus | 41.74 | 26.02 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 38.7 | 24.25 |
| CDY15597 | Canola | nucleus | 20.43 | 23.98 |
| CDY66177 | Canola | nucleus | 20.43 | 23.86 |
| GSMUA_Achr10P... | Banana | nucleus | 39.57 | 23.82 |
| KRG90815 | Soybean | nucleus | 42.17 | 23.21 |
| KRH35955 | Soybean | nucleus | 42.17 | 23.15 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 43.04 | 22.92 |
| CDY06672 | Canola | nucleus | 20.0 | 22.77 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 37.39 | 22.69 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 32.61 | 22.52 |
| CDY10244 | Canola | nucleus | 19.57 | 22.28 |
| GSMUA_Achr10P... | Banana | nucleus | 32.17 | 21.08 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 39.57 | 21.06 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 39.57 | 21.06 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 37.39 | 20.98 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 39.13 | 20.83 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 36.96 | 20.73 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 36.96 | 20.73 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 36.96 | 20.68 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 40.43 | 20.58 |
| Solyc04g007210.2.1 | Tomato | nucleus | 38.26 | 20.56 |
| Solyc05g009310.2.1 | Tomato | nucleus | 38.26 | 20.14 |
| CDY36106 | Canola | nucleus | 33.48 | 20.05 |
| PGSC0003DMT400037755 | Potato | nucleus | 38.7 | 19.91 |
| Zm00001d045661_P001 | Maize | nucleus | 39.13 | 19.74 |
| Os03t0711100-01 | Rice | plastid | 35.65 | 19.48 |
| EER88191 | Sorghum | nucleus, plastid | 40.0 | 19.41 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 35.65 | 19.25 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 35.65 | 19.16 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 36.09 | 19.12 |
| Zm00001d013443_P001 | Maize | plastid | 33.91 | 18.89 |
| EER93585 | Sorghum | plastid | 34.35 | 18.81 |
| Os06t0264200-00 | Rice | plastid | 39.13 | 18.71 |
| Os02t0731700-02 | Rice | nucleus | 36.52 | 18.58 |
| CDY42769 | Canola | nucleus | 18.7 | 18.45 |
| EES05581 | Sorghum | nucleus, plastid | 38.26 | 18.03 |
| Zm00001d017939_P001 | Maize | nucleus | 36.09 | 17.85 |
| CDX78575 | Canola | nucleus | 22.17 | 16.94 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 36.09 | 16.67 |
| CDY09849 | Canola | nucleus | 23.91 | 16.62 |
| Zm00001d033719_P001 | Maize | plastid | 33.91 | 16.56 |
| CDY66242 | Canola | nucleus | 22.61 | 16.56 |
| CDX69586 | Canola | nucleus, plastid | 23.48 | 16.36 |
| CDX85600 | Canola | nucleus | 22.61 | 16.35 |
| CDX91067 | Canola | nucleus | 22.61 | 16.1 |
| CDY47926 | Canola | nucleus | 23.91 | 14.03 |
| CDY42238 | Canola | nucleus | 23.48 | 13.99 |
| CDX89377 | Canola | plastid | 23.04 | 13.87 |
| CDY38274 | Canola | nucleus, plastid | 23.91 | 13.85 |
| CDX94392 | Canola | plastid | 23.04 | 13.8 |
| CDY52734 | Canola | nucleus, plastid | 22.61 | 13.07 |
| PGSC0003DMT400020030 | Potato | nucleus | 31.74 | 12.97 |
| CDX92740 | Canola | plastid | 20.87 | 12.09 |
| KRH13468 | Soybean | cytosol | 1.74 | 4.04 |
| CDY07382 | Canola | nucleus | 0.43 | 2.27 |
| CDY04231 | Canola | mitochondrion | 0.43 | 2.27 |
Protein Annotations
| EnsemblPlants:CDY04230 | EnsemblPlantsGene:GSBRNA2T00117951001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF21 | PFAM:PF06203 | PFscan:PS51017 | ProteinID:CDY04230 |
| ProteinID:CDY04230.1 | UniParc:UPI0004EF4889 | MapMan:15.5.1.2 | : | : | : |
Description
BnaC06g25850D
Coordinates
chrLK031950:-:373328..374722
Molecular Weight (calculated)
26651.9 Da
IEP (calculated)
6.320
GRAVY (calculated)
-0.648
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFHDLVPGM SLEDQIYEVE EQLIFEVPML NPMGYEQCLK ESVGTKIVFP MMPVCFKSSE EEDNNTESCL NGLFPTQMEL AQFSADVETL LEEEVATREM
101: SGRIKEEEKE KVLMLRLDYE NVISAWGSHR TPWTALEPSE IDLDMLRRQT NSVCESGGEA HHHNHFRGLG LHMREAGDGG REARVSRYRE KRRTRLFSKK
201: IRYEVRKLNA EKRPRMKGRF VKRSSIAAAH
101: SGRIKEEEKE KVLMLRLDYE NVISAWGSHR TPWTALEPSE IDLDMLRRQT NSVCESGGEA HHHNHFRGLG LHMREAGDGG REARVSRYRE KRRTRLFSKK
201: IRYEVRKLNA EKRPRMKGRF VKRSSIAAAH
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.