Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P18710_001 | Banana | plastid | 74.35 | 74.93 |
| CDY04231 | Canola | mitochondrion | 7.59 | 65.91 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 49.21 | 51.23 |
| KRH13468 | Soybean | cytosol | 12.83 | 49.49 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 42.15 | 48.35 |
| CDY03851 | Canola | nucleus | 42.41 | 43.55 |
| GSMUA_Achr10P... | Banana | nucleus | 39.27 | 42.73 |
| CDY65591 | Canola | nucleus | 38.74 | 42.53 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 47.91 | 42.36 |
| CDY67920 | Canola | nucleus | 38.48 | 42.24 |
| Solyc05g009310.2.1 | Tomato | nucleus | 46.86 | 40.96 |
| CDY51133 | Canola | nucleus | 40.05 | 40.58 |
| KRG90815 | Soybean | nucleus | 44.24 | 40.43 |
| CDY44890 | Canola | nucleus | 42.41 | 40.4 |
| KRH35955 | Soybean | nucleus | 44.24 | 40.33 |
| Bra012475.1-P | Field mustard | nucleus | 42.93 | 40.2 |
| CDY53119 | Canola | nucleus | 39.53 | 40.16 |
| CDX81527 | Canola | nucleus | 42.15 | 40.15 |
| Bra033925.1-P | Field mustard | nucleus | 41.88 | 39.9 |
| PGSC0003DMT400037755 | Potato | nucleus | 46.34 | 39.6 |
| CDY04230 | Canola | nucleus | 23.82 | 39.57 |
| CDX77359 | Canola | nucleus | 16.49 | 39.38 |
| AT1G68520.1 | Thale cress | nucleus | 41.62 | 39.16 |
| CDY24402 | Canola | nucleus | 37.43 | 38.75 |
| AT1G25440.1 | Thale cress | nucleus | 42.15 | 38.61 |
| Bra024750.1-P | Field mustard | nucleus | 41.36 | 38.16 |
| Solyc04g007210.2.1 | Tomato | nucleus | 42.41 | 37.85 |
| Bra004035.1-P | Field mustard | nucleus | 40.31 | 32.49 |
| CDY36106 | Canola | nucleus | 32.46 | 32.29 |
| Bra010994.1-P | Field mustard | nucleus | 33.25 | 31.2 |
| GSMUA_Achr11P... | Banana | nucleus | 13.61 | 27.51 |
| PGSC0003DMT400020030 | Potato | nucleus | 39.01 | 26.47 |
| GSMUA_Achr10P... | Banana | nucleus | 17.54 | 23.26 |
| GSMUA_Achr6P01780_001 | Banana | nucleus | 19.37 | 18.05 |
| GSMUA_Achr7P19660_001 | Banana | mitochondrion | 19.9 | 17.16 |
| GSMUA_Achr10P... | Banana | nucleus | 11.52 | 13.66 |
Protein Annotations
| MapMan:15.5.1.2 | InterPro:CCT_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSMUA_Achr10G29990_001 |
| EnsemblPlants:GSMUA_Achr10P29990_001 | EnsemblPlants:GSMUA_Achr10T29990_001 | InterPro:IPR000315 | InterPro:IPR010402 | UniProt:M0RMM3 | PFAM:PF00643 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF21 | SMART:SM00336 |
| UniParc:UPI0002950D1C | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
Putative Zinc finger protein CONSTANS-LIKE 16 [Source:GMGC_GENE;Acc:GSMUA_Achr10G29990_001]
Coordinates
chr10:+:32298739..32300406
Molecular Weight (calculated)
42749.9 Da
IEP (calculated)
6.628
GRAVY (calculated)
-0.753
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHFEKQRSP EVVASSAVAG KTARACDGCA RRRARWYCPA DDAFLCQNCD FSVHSANPLA RRHRRVRLRA ADVDSEESSP SWLRGFKRKA RTPRAHQHEK
101: TTSGARRLRP TTVPELIETS VDETEEEEEQ LLYCVPVVDP ALAEFCSPPM LDDSNTCSGD ETKPTMDSTD GTPASTSTVD TANRLAPFLP SVTDLAEFAA
201: DMESLLGGGL DSRDGSFSME KLGLVNSMED NVDYCLDKEE LEEENMEVAS EQQQVTKKAK LRLDYEAVIS AWSSYGSSPW TDGERPQINL DYYWPDYMVS
301: SVTPSLKERG RGETPGTGHG SDTGVGFVDV GRQARVTRYR EKRRTRLFAK KIRYEVRKLN AEKRPRMKGR FVKRAPGSAF AH
101: TTSGARRLRP TTVPELIETS VDETEEEEEQ LLYCVPVVDP ALAEFCSPPM LDDSNTCSGD ETKPTMDSTD GTPASTSTVD TANRLAPFLP SVTDLAEFAA
201: DMESLLGGGL DSRDGSFSME KLGLVNSMED NVDYCLDKEE LEEENMEVAS EQQQVTKKAK LRLDYEAVIS AWSSYGSSPW TDGERPQINL DYYWPDYMVS
301: SVTPSLKERG RGETPGTGHG SDTGVGFVDV GRQARVTRYR EKRRTRLFAK KIRYEVRKLN AEKRPRMKGR FVKRAPGSAF AH
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.