Factsheet for Bra004035.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027820.1-P
Bra035410.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Bra027820.1-P	AT1G60010.1	21798944
AT1G68520.1	Bra035410.1-P	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04231	Canola	mitochondrion	8.65	93.18
CDY04230	Canola	nucleus	41.56	85.65
AT1G68520.1	Thale cress	nucleus	67.3	78.57
Bra033925.1-P	Field mustard	nucleus	65.4	77.31
Bra012475.1-P	Field mustard	nucleus	51.27	59.56
Bra024750.1-P	Field mustard	nucleus	51.05	58.45
KRH13468	Soybean	cytosol	11.39	54.55
VIT_01s0011g03520.t01	Wine grape	nucleus	40.93	44.91
KRH35955	Soybean	nucleus	38.19	43.2
KRG90815	Soybean	nucleus	37.76	42.82
Solyc04g007210.2.1	Tomato	nucleus	36.92	40.89
GSMUA_Achr7P12560_001	Banana	nucleus	28.48	40.54
GSMUA_Achr10P...	Banana	nucleus	32.49	40.31
Solyc05g009310.2.1	Tomato	nucleus	36.71	39.82
GSMUA_Achr7P18710_001	Banana	plastid	31.65	39.58
GSMUA_Achr4P30670_001	Banana	nucleus	30.59	39.51
PGSC0003DMT400037755	Potato	nucleus	36.5	38.7
GSMUA_Achr10P...	Banana	nucleus	28.27	38.18
Bra010994.1-P	Field mustard	nucleus	32.07	37.35
TraesCS7D01G209000.1	Wheat	nucleus	33.33	36.57
TraesCS7A01G206200.1	Wheat	nucleus	33.12	36.34
TraesCS7B01G113400.1	Wheat	nucleus	32.7	35.88
TraesCS4D01G046200.1	Wheat	nucleus, plastid	30.38	35.12
TraesCS4A01G268500.1	Wheat	nucleus, plastid	30.38	35.12
HORVU4Hr1G007420.1	Barley	nucleus, plastid	30.38	35.12
TraesCS4B01G045700.1	Wheat	nucleus, plastid	30.38	35.04
Zm00001d037327_P001	Maize	mitochondrion, nucleus	33.33	34.96
TraesCS6A01G293200.1	Wheat	nucleus	30.8	34.27
TraesCS6B01G323400.1	Wheat	nucleus	30.8	34.11
Zm00001d045661_P001	Maize	nucleus	32.7	33.99
TraesCS6D01G274100.1	Wheat	nucleus	31.01	33.87
Os03t0711100-01	Rice	plastid	29.75	33.49
EER88191	Sorghum	nucleus, plastid	33.33	33.33
Os02t0731700-02	Rice	nucleus	31.65	33.19
Zm00001d013443_P001	Maize	plastid	28.48	32.69
Os06t0264200-00	Rice	plastid	33.12	32.64
EER93585	Sorghum	plastid	28.69	32.38
Zm00001d017939_P001	Maize	nucleus	30.8	31.4
EES05581	Sorghum	nucleus, plastid	31.86	30.94
PGSC0003DMT400020030	Potato	nucleus	36.71	30.91
Zm00001d033719_P001	Maize	plastid	30.17	30.36
Bra032273.1-P	Field mustard	nucleus	19.83	29.94
HORVU6Hr1G073170.1	Barley	nucleus	31.22	29.72
Bra023461.1-P	Field mustard	cytosol	8.86	27.45
Bra015548.1-P	Field mustard	nucleus	10.97	25.62
Bra006252.1-P	Field mustard	nucleus	12.24	19.27
Bra002752.1-P	Field mustard	nucleus, plastid	15.4	18.58
Bra020461.1-P	Field mustard	nucleus	15.19	18.27
Bra013939.1-P	Field mustard	plastid	14.13	17.54
Bra019134.1-P	Field mustard	plastid	13.5	16.71
Bra008763.1-P	Field mustard	nucleus, plastid	13.5	11.96
Bra023462.1-P	Field mustard	nucleus	3.59	10.69

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra004035	EnsemblPlants:Bra004035.1	EnsemblPlants:Bra004035.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4CIK1
PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21
SMART:SM00336	TMHMM:TMhelix	UniParc:UPI00025419F7	InterPro:Znf_B-box	SEG:seg	:

Description

AT1G68520 (E=2e-175) | zinc finger (B-box type) family protein

Coordinates

chrA07:+:16439306..16442216

Molecular Weight (calculated)

53501.4 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.638

Length

474 amino acids

Sequence
(BLAST)

001: MMKSLANAVG GKTARACDSC VKKRARWYCA ADDAFLCHSC DSSVHSANPL ACRHERVRLK TASAGKHRHA SSSPPHPATW HQGFTRKART PRGGKKSHTM
101: VFHDLVPEMS SEDQRYEVEE QLIFEVPVLN PMGNEQCLKE TKIVFPMMPV CFKSNEEEDD NTESCLNGLF PTEMELAQFS ADVETLLGGG TDREFHAMEE
201: IGFGEMLKIE KEEVKEEEEV ATREVCDLDD ANETSPFEIS FDYESSHKTA FEEDDEKEDV MKNLVDVGVN EVTGRIKEEK KEKVLMLRLD YETVISTWGS
301: QGTPWTALKP SEIDLDMLCC QTNSMCESGG EAHHHNHFPG LGLHMREAGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG SSGTLFFSLG
401: ISIGLMMTIF ATVTFHRNNR HHNPSSPSPS TAVVAEMDAK PLRVNAGPPP TRKKDLWRVE AFPHPLLECF LSTN

Best Arabidopsis Sequence Match ( AT1G68520.1 )
(BLAST)

001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH

Arabidopsis Description

COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.