Factsheet for Bra032273.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66242	Canola	nucleus	100.0	100.0
AT1G49130.1	Thale cress	nucleus	71.66	69.02
Bra015548.1-P	Field mustard	nucleus	19.75	30.54
Bra023461.1-P	Field mustard	cytosol	12.42	25.49
Bra012475.1-P	Field mustard	nucleus	30.25	23.28
Bra033925.1-P	Field mustard	nucleus	29.62	23.19
Bra024750.1-P	Field mustard	nucleus	30.57	23.19
Bra004035.1-P	Field mustard	nucleus	29.94	19.83
Bra010994.1-P	Field mustard	nucleus	24.52	18.92
Bra006252.1-P	Field mustard	nucleus	17.83	18.6
Bra019134.1-P	Field mustard	plastid	18.79	15.4
Bra020461.1-P	Field mustard	nucleus	18.47	14.72
Bra013939.1-P	Field mustard	plastid	17.83	14.66
Bra002752.1-P	Field mustard	nucleus, plastid	17.2	13.74
Bra008763.1-P	Field mustard	nucleus, plastid	18.47	10.84
Bra023462.1-P	Field mustard	nucleus	4.78	9.43

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra032273	EnsemblPlants:Bra032273.1	EnsemblPlants:Bra032273.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4ETZ1	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF19	SMART:SM00336	UniParc:UPI0002547C9B
InterPro:Znf_B-box	:	:	:	:	:

Description

AT1G49130 (E=9e-121) | zinc finger (B-box type) family protein

Coordinates

chrA05:+:12099646..12100706

Molecular Weight (calculated)

37091.2 Da

IEP (calculated)

6.431

GRAVY (calculated)

-1.127

Length

314 amino acids

Sequence
(BLAST)

001: MIPERQEDVK RPRDCELCLN KHAVWYCASD DAFLCHVCDE SVHRANQVAT KHDRVCLKTN EISNGVLQGT ARKPVWHSWF RRKPRTPRVR CERKPQGKVD
101: DERRREGPHV PEIGGETNEE DENLTSLVPE FQGFIEMEFF LNNHDGSEET MRQFNVDHET DEMEDLCYIE EEGKTNGDEA CHEQSLTSCK NEYDINPTLV
201: TTKTEENAKQ RNLLLRLNYE NVIAAWDKQE SPTTATWNQN EFSNTSNFQL VPPGIEEEKV SNRSEREARV WRYRDKRKNR LFEKKIRYEV RKVNADKRPR
301: IKGRFVRRSL TNDF

Best Arabidopsis Sequence Match ( AT1G49130.1 )
(BLAST)

001: MTSHQNIKIS EKIMISKYQE DVKQPRACEL CLNKHAVWYC ASDDAFLCHV CDESVHSANH VATKHERVCL RTNEISNDVR GGTTLTSVWH SGFRRKARTP
101: RSRYEKKPQQ KIDDERRRED PRVPEIGGEV MFFIPEANDD DMTSLVPEFE GFTEMGFFLS NHNGTEETTK QFNFEEEADT MEDLYYNGEE EDKTDGAEAC
201: PGQYLMSCKK DYDNVITVSE KTEEIEDCYE NNARHRLNYE NVIAAWDKQE SPRDVKNNTS SFQLVPPGIE EKRVRSEREA RVWRYRDKRK NRLFEKKIRY
301: EVRKVNADKR PRMKGRFVRR SLAIDS

Arabidopsis Description

B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I1N0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.