Factsheet for Bra020461.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47926	Canola	nucleus	98.22	98.72
CDY42238	Canola	nucleus	92.39	94.3
Bra002752.1-P	Field mustard	nucleus, plastid	71.07	71.25
AT5G57180.2	Thale cress	nucleus, plastid	70.3	63.68
Bra013939.1-P	Field mustard	plastid	52.03	53.66
Bra019134.1-P	Field mustard	plastid	51.52	53.0
VIT_11s0103g00760.t01	Wine grape	plastid	48.98	46.28
KRH02778	Soybean	nucleus, plastid	46.45	45.98
KRH19100	Soybean	nucleus	45.18	44.61
PGSC0003DMT400059170	Potato	plastid	46.45	42.36
Solyc07g008540.2.1	Tomato	nucleus, plastid	45.43	41.44
GSMUA_Achr6P01780_001	Banana	nucleus	38.32	36.83
GSMUA_Achr7P19660_001	Banana	mitochondrion	39.34	34.99
GSMUA_Achr10P...	Banana	nucleus	28.17	34.47
KRH37334	Soybean	nucleus, plastid	31.47	33.16
Bra023461.1-P	Field mustard	cytosol	12.69	32.68
KRH12328	Soybean	plastid	30.71	30.63
EES04516	Sorghum	plastid	37.31	30.25
Zm00001d053880_P001	Maize	plastid	35.28	29.39
HORVU6Hr1G021460.2	Barley	plastid	36.29	29.18
TraesCS6A01G118000.1	Wheat	plastid	36.04	28.86
TraesCS6D01G108000.1	Wheat	plastid	36.04	28.74
TraesCS6B01G146200.2	Wheat	plastid	36.04	28.74
Zm00001d015268_P001	Maize	plastid	33.76	28.18
Os02t0148000-01	Rice	plastid	33.5	28.03
Os06t0699600-01	Rice	plastid	32.49	27.47
Bra015548.1-P	Field mustard	nucleus	13.96	27.09
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	20.05	26.78
TraesCS7D01G414400.2	Wheat	plastid	30.46	26.26
TraesCS7A01G422200.1	Wheat	nucleus, plastid	30.2	25.98
TraesCS7B01G322600.1	Wheat	plastid	29.95	25.82
Zm00001d014664_P001	Maize	plastid	28.17	25.52
KXG20763	Sorghum	plastid	29.19	25.33
Bra006252.1-P	Field mustard	nucleus	15.48	20.27
Bra012475.1-P	Field mustard	nucleus	19.8	19.12
Bra024750.1-P	Field mustard	nucleus	19.54	18.6
Bra032273.1-P	Field mustard	nucleus	14.72	18.47
Bra033925.1-P	Field mustard	nucleus	18.78	18.45
Bra010994.1-P	Field mustard	nucleus	16.75	16.22
Bra004035.1-P	Field mustard	nucleus	18.27	15.19
Bra008763.1-P	Field mustard	nucleus, plastid	16.75	12.34
Bra023462.1-P	Field mustard	nucleus	3.3	8.18

Protein Annotations

EnsemblPlants:Bra020461.1	EnsemblPlants:Bra020461.1-P	EnsemblPlantsGene:Bra020461	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402
PANTHER:PTHR31874	PANTHER:PTHR31874:SF10	PFAM:PF06203	PFscan:PS51017	SEG:seg	UniParc:UPI0002545F03
UniProt:M4DVB7	MapMan:15.5.1.2	:	:	:	:

Description

AT5G57180 (E=9e-044) CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS 2); transcription regulator

Coordinates

chrA02:-:6894679..6896952

Molecular Weight (calculated)

43855.3 Da

IEP (calculated)

8.202

GRAVY (calculated)

-0.711

Length

394 amino acids

Sequence
(BLAST)

001: MSACLSSGGS AAAYSFELEK IKSPPSSSTT TTTRAASPSS TITESSNSPF AISTRKPRTQ RKRPNQSYNE AAALLSTAYP NIFSPSSINH LYTNKKTHQN
101: PHFYGFDEED AELLLPSESI EEPDFLFIPA IQAKPDLYSD QKEVNSGVSI NESEVSQFEF SDEFDAESIL GEDVEEGIDS IMGKLEPGIN RGRRINRLSQ
201: IMTMNKFAEN IPLGLGLRSA LRDHNDANRW RIHTVDFEQI SPRIQTVVDV KTEEVKKSKK KKKKVAAAAA ATVPSTEPSK EEAEERSGHH PMLKLDYDGV
301: LEAWSDKATP FPEEILGSEA TGGADVNARL AQIDLFGDNG VREASVLRYK EKRQTRLFSK KIRYQVRKLN ADQRPRVKGR FVRRPSASPP SCQR

Best Arabidopsis Sequence Match ( AT5G57180.2 )
(BLAST)

001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR

Arabidopsis Description

CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.