Factsheet for Bra010994.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36106	Canola	nucleus	91.4	96.88
KRH13468	Soybean	cytosol	10.57	43.43
Bra012475.1-P	Field mustard	nucleus	42.75	42.65
Bra024750.1-P	Field mustard	nucleus	43.24	42.51
AT1G25440.1	Thale cress	nucleus	42.26	41.25
Bra033925.1-P	Field mustard	nucleus	35.38	35.91
KRH35955	Soybean	nucleus	35.63	34.61
GSMUA_Achr10P...	Banana	nucleus	29.73	34.47
VIT_01s0011g03520.t01	Wine grape	nucleus	36.36	34.26
GSMUA_Achr4P30670_001	Banana	nucleus	30.71	34.06
KRG90815	Soybean	nucleus	34.64	33.73
GSMUA_Achr7P18710_001	Banana	plastid	31.2	33.51
GSMUA_Achr10P...	Banana	nucleus	31.2	33.25
Solyc04g007210.2.1	Tomato	nucleus	34.89	33.18
Solyc05g009310.2.1	Tomato	nucleus	35.14	32.72
Bra004035.1-P	Field mustard	nucleus	37.35	32.07
PGSC0003DMT400037755	Potato	nucleus	34.89	31.77
GSMUA_Achr7P12560_001	Banana	nucleus	25.31	30.93
TraesCS7D01G209000.1	Wheat	nucleus	31.94	30.09
Zm00001d037327_P001	Maize	mitochondrion, nucleus	33.17	29.87
TraesCS7A01G206200.1	Wheat	nucleus	31.7	29.86
Zm00001d045661_P001	Maize	nucleus	33.42	29.82
Zm00001d013443_P001	Maize	plastid	30.22	29.78
Os03t0711100-01	Rice	plastid	30.71	29.69
TraesCS7B01G113400.1	Wheat	nucleus	31.45	29.63
EER93585	Sorghum	plastid	29.98	29.05
TraesCS4A01G268500.1	Wheat	nucleus, plastid	29.24	29.02
TraesCS6B01G323400.1	Wheat	nucleus	30.47	28.97
TraesCS4B01G045700.1	Wheat	nucleus, plastid	29.24	28.95
TraesCS6A01G293200.1	Wheat	nucleus	30.22	28.87
TraesCS4D01G046200.1	Wheat	nucleus, plastid	28.99	28.78
Os02t0731700-02	Rice	nucleus	31.7	28.54
HORVU4Hr1G007420.1	Barley	nucleus, plastid	28.75	28.54
TraesCS6D01G274100.1	Wheat	nucleus	30.22	28.34
Zm00001d017939_P001	Maize	nucleus	31.94	27.96
EER88191	Sorghum	nucleus, plastid	32.19	27.64
Os06t0264200-00	Rice	plastid	32.19	27.23
Zm00001d033719_P001	Maize	plastid	30.47	26.33
EES05581	Sorghum	nucleus, plastid	30.96	25.82
PGSC0003DMT400020030	Potato	nucleus	35.38	25.58
HORVU6Hr1G073170.1	Barley	nucleus	30.22	24.7
Bra032273.1-P	Field mustard	nucleus	18.92	24.52
Bra023461.1-P	Field mustard	cytosol	7.37	19.61
Bra015548.1-P	Field mustard	nucleus	9.34	18.72
Bra020461.1-P	Field mustard	nucleus	16.22	16.75
Bra019134.1-P	Field mustard	plastid	15.23	16.19
Bra002752.1-P	Field mustard	nucleus, plastid	15.23	15.78
Bra006252.1-P	Field mustard	nucleus	11.3	15.28
Bra013939.1-P	Field mustard	plastid	14.0	14.92
Bra023462.1-P	Field mustard	nucleus	4.18	10.69
Bra008763.1-P	Field mustard	nucleus, plastid	12.04	9.16

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra010994	EnsemblPlants:Bra010994.1	EnsemblPlants:Bra010994.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270
InterPro:IPR000315	InterPro:IPR010402	UniProt:M4D3E0	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	SMART:SM00336	UniParc:UPI0002545E43	InterPro:Znf_B-box	SEG:seg

Description

AT1G25440 (E=8e-125) | zinc finger (B-box type) family protein

Coordinates

chrA08:-:17484006..17487610

Molecular Weight (calculated)

45400.6 Da

IEP (calculated)

5.448

GRAVY (calculated)

-0.708

Length

407 amino acids

Sequence
(BLAST)

001: MKSLANCVRA KTARTCDNCL KKQAHWFCAA DEAFLCQSCD TSVHSANLLA RRHERVRLKD STSPQQEAPT WYRGFTRKPR TPRGSGKRNN SSTFQDMVPE
101: ISAEGQTDSS EVEGPLICQV PVLGPMVVEP KIKFPTMRSG VMIDGHEDED KDESCLNGIF PTNMEVEDFA ADVETLLGHG LDKESYTMEE LGLSNTEMFK
201: KDEIEDKETK AMNMDIEIGD DDQGNRDGTL PFDLNYPQNA YEEDAIKNVE SSGECVQAKE EKKKNVLMLS LDYDQVISAW GGQGLPWTSG GPPELDINIS
301: GSPVVSKVSK RDNGRKSRKK RRVGGCLPSS VVGDGGREAS VSRYREKKKT RSFTKTIRYE TVVPYDKETE EEVIAVLKIA MACLSISPEK SLSTKRIWEQ
401: NCCKPKV

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.