Factsheet for PGSC0003DMT400037755

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	PGSC0003DMT400040233	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009310.2.1	Tomato	nucleus	89.71	91.76
CDY04231	Canola	mitochondrion	6.94	70.45
VIT_01s0011g03520.t01	Wine grape	nucleus	51.68	53.47
CDY03851	Canola	nucleus	40.27	48.39
CDY67920	Canola	nucleus	36.91	47.41
CDY65591	Canola	nucleus	36.91	47.41
CDX77359	Canola	nucleus	16.78	46.88
GSMUA_Achr10P...	Banana	nucleus	39.6	46.34
GSMUA_Achr7P18710_001	Banana	plastid	39.15	46.17
Bra012475.1-P	Field mustard	nucleus	41.83	45.83
CDY51133	Canola	nucleus	38.48	45.62
Bra024750.1-P	Field mustard	nucleus	42.06	45.41
AT1G25440.1	Thale cress	nucleus	42.28	45.32
GSMUA_Achr10P...	Banana	nucleus	35.57	45.3
CDY53119	Canola	nucleus	38.03	45.21
PGSC0003DMT400014362	Potato	nucleus	40.27	44.89
GSMUA_Achr4P30670_001	Banana	nucleus	35.79	43.6
GSMUA_Achr7P12560_001	Banana	nucleus	31.54	42.34
CDY24402	Canola	nucleus	34.9	42.28
AT1G68520.1	Thale cress	nucleus	38.26	42.12
CDY44890	Canola	nucleus	37.36	41.65
PGSC0003DMT400020030	Potato	nucleus	51.9	41.21
CDX81527	Canola	nucleus	36.91	41.15
Bra033925.1-P	Field mustard	nucleus	36.47	40.65
TraesCS7D01G209000.1	Wheat	nucleus	38.48	39.81
TraesCS7B01G113400.1	Wheat	nucleus	38.26	39.58
TraesCS4D01G046200.1	Wheat	nucleus, plastid	36.24	39.51
HORVU4Hr1G007420.1	Barley	nucleus, plastid	36.24	39.51
TraesCS7A01G206200.1	Wheat	nucleus	38.03	39.35
TraesCS4A01G268500.1	Wheat	nucleus, plastid	36.02	39.27
TraesCS4B01G045700.1	Wheat	nucleus, plastid	36.02	39.17
Os03t0711100-01	Rice	plastid	36.47	38.72
CDY04230	Canola	nucleus	19.91	38.7
TraesCS6A01G293200.1	Wheat	nucleus	36.69	38.5
Zm00001d037327_P001	Maize	mitochondrion, nucleus	38.93	38.5
TraesCS6B01G323400.1	Wheat	nucleus	36.47	38.08
TraesCS6D01G274100.1	Wheat	nucleus	36.91	38.02
Zm00001d045661_P001	Maize	nucleus	37.81	37.06
Os02t0731700-02	Rice	nucleus	37.14	36.73
EER88191	Sorghum	nucleus, plastid	38.7	36.5
Bra004035.1-P	Field mustard	nucleus	38.7	36.5
Zm00001d013443_P001	Maize	plastid	33.56	36.32
Os06t0264200-00	Rice	plastid	38.48	35.76
EER93585	Sorghum	plastid	33.56	35.71
CDY36106	Canola	nucleus	30.43	35.42
Zm00001d017939_P001	Maize	nucleus	36.69	35.27
Bra010994.1-P	Field mustard	nucleus	31.77	34.89
EES05581	Sorghum	nucleus, plastid	38.03	34.84
HORVU6Hr1G073170.1	Barley	nucleus	36.47	32.73
Zm00001d033719_P001	Maize	plastid	33.11	31.42
PGSC0003DMT400032849	Potato	nucleus	14.54	20.12
PGSC0003DMT400059170	Potato	plastid	18.79	19.44

Protein Annotations

EntrezGene:102578395	MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	EMBL:KX576520	UniProt:M1B5V1	PFAM:PF00643	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400014566
PGSC:PGSC0003DMG400014566	EnsemblPlants:PGSC0003DMT400037755	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21
SMART:SM00336	UniParc:UPI000296EAA6	RefSeq:XP_006344138.1	InterPro:Znf_B-box	SEG:seg	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014566]

Coordinates

chr5:-:2941260..2943570

Molecular Weight (calculated)

51221.1 Da

IEP (calculated)

5.767

GRAVY (calculated)

-0.775

Length

447 amino acids

Sequence
(BLAST)

001: MVSERKLASA MGGKTTRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLARRHERVR LKTSSLKQPS SSSSSDDYFP DLESPLSISS VSVPSWHRGF
101: TRKVRTPRHG RKASKSAGDG DVIQRNPIHL VPEILSDENS HDENEEEQLL YRVPILDPFV AQLYSSATRN NHEMVESNAT AAADADSEFK LESKEMMLQD
201: DICNVDLNRF HEMLPSEMEL AEFAADVESL LGKGLDDESF DMEGLGLLGV CNKEENSMEY SMISHEKVKI EDEGEIEVVR KTISATTHDH QYNHTHHDID
301: INEDTFEFKF DCDSPMNIIG EDEVIMKDEN KKKILLNLDY EGVLTAWADQ RSPWTNGERP ELDSNDSWPH CMGNYMGIMN ENVTIVDRGR EARVTRYREK
401: RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRTNFVTTTT PNYPLVK

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.