Factsheet for PGSC0003DMT400014362

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73870.1	PGSC0003DMT400040233	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119540.2.1	Tomato	nucleus	94.02	92.4
KRH60334	Soybean	nucleus	45.14	49.59
KRH41630	Soybean	nucleus	45.39	49.06
KRH48479	Soybean	nucleus	48.38	45.43
PGSC0003DMT400037755	Potato	nucleus	44.89	40.27
KRH39195	Soybean	nucleus	47.38	39.58
AT1G73870.1	Thale cress	nucleus	37.66	38.52
PGSC0003DMT400020030	Potato	nucleus	42.39	30.2
PGSC0003DMT400059170	Potato	plastid	20.45	18.98
PGSC0003DMT400032849	Potato	nucleus	14.71	18.27

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009641
GO:GO:0009653	GO:GO:0009987	GO:GO:0010223	GO:GO:0045893	InterPro:IPR000315	InterPro:IPR010402
EMBL:KX576524	UniProt:M1A433	PFAM:PF00643	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400005633	PGSC:PGSC0003DMG400005633
EnsemblPlants:PGSC0003DMT400014362	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF19	SMART:SM00336
UniParc:UPI0002958ABB	InterPro:Znf_B-box	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005633]

Coordinates

chr3:-:58929268..58930917

Molecular Weight (calculated)

45831.4 Da

IEP (calculated)

5.581

GRAVY (calculated)

-0.806

Length

401 amino acids

Sequence
(BLAST)

001: MTSGSKTANA IGGKTARACD SCLSKRARWF CPADDAFLCQ SCDVSIHSAN QLASRHERVR LDTCSNKSTI TKLVDKTHQP AWHQGFTRKA RTPRNGKKAQ
101: IRQRKKNEEN RVPEIGSDEN EFENEEQLLY RVPIFDPFEA ELCNVPDETG SIADLDILLN TEDACDDLNL PEFLSSDIEL AEFAADVETL LGGEEEQSTR
201: LLNADFEDNK AIKIEVEDEE MRAVVACHLD PELDMEREGL NWNFDEYYEE RVEQKVMAAV TEFVASAEYS GSSTKSDEKN RLFLRLNHEA VISAWPNQSS
301: PWTNGIRPHF NPDDYWPDFS ETCGGNLGYY GGHVRSGDGG REARVLRYRE KRRTRLFSKK IRYEVRKLNA EKRPRLKGRF IKRNSSSSFS VPGFPYMMNK
401: R

Best Arabidopsis Sequence Match ( AT1G68520.1 )
(BLAST)

001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH

Arabidopsis Description

COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.