CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99257
KRH45741
KRH69484
KRH74672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73870.1	KRG99257	AT1G60010.1	21798944
AT1G73870.1	KRH45741	AT1G60010.1	21798944
AT1G73870.1	KRH69484	AT1G60010.1	21798944
AT1G73870.1	KRH74672	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39195	Soybean	nucleus	85.95	76.46
KRH13468	Soybean	cytosol	15.69	67.68
KRH60334	Soybean	nucleus	56.21	65.75
KRH41630	Soybean	nucleus	54.33	62.53
PGSC0003DMT400014362	Potato	nucleus	45.43	48.38
Solyc03g119540.2.1	Tomato	nucleus	44.96	47.06
KRH35955	Soybean	nucleus	44.03	44.87
KRG90815	Soybean	nucleus	42.86	43.78
AT1G73870.1	Thale cress	nucleus	35.83	39.03
KRH17099	Soybean	nucleus	14.29	27.73
KRH72745	Soybean	nucleus	12.88	23.91
KRH07084	Soybean	plastid	17.56	21.19
KRH02778	Soybean	nucleus, plastid	19.67	21.11
KRH19100	Soybean	nucleus	19.67	21.05
KRG94369	Soybean	plastid	16.63	20.06
KRH37334	Soybean	nucleus, plastid	16.86	19.25
KRH12328	Soybean	plastid	14.75	15.95

Protein Annotations

EntrezGene:100802113	MapMan:15.5.1.2	EMBL:ACUP02004241	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_07G091400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	EMBL:HM068903	InterPro:IPR000315	InterPro:IPR010402	UniProt:K7L0J7	ProteinID:KRH48477.1
ProteinID:KRH48478.1	EnsemblPlants:KRH48479	ProteinID:KRH48479	ProteinID:KRH48479.1	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF19	SMART:SM00336	UniParc:UPI0001E23D82
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:8539101..8547001

Molecular Weight (calculated)

47925.8 Da

IEP (calculated)

4.625

GRAVY (calculated)

-0.643

Length

427 amino acids

Sequence
(BLAST)

001: MTNEMKEASA LGARTARACE SCLKVRARWY CAADDAFLCH GCDNMVHSAN QLASRHERVK LQTASSKVNY SVTPKVAWHS GFTRKARTPR HNNNRHSSLK
101: QQQQKKPLHE ERGEEEVFFN NTISLLPLVP ELGSEEPLLN DETEEQLLCR VPVFDAELCS IYNEVKDEVV AAGEEALDLE NFSSEFLPSD TDLAEFTADV
201: KSFLGNGADE DSPDDDEHVK ESELLILDCK EEEGDEEMDE CIDGVLIGAK DAMVKVKDEE ELDADDDTAC HLDSILDMNG EAFNWNIVES ESPAQAQEDE
301: VSKVGTKKDI FLRLNYEEVI TAWASQGSPW TNGTPPKFFN SDDCWLDFLG SNGGNVQCCY GAVGSLRVHA DGGREARVSR YREKRRTRLF AKKIRYEVRK
401: LNAEKRPRMK GRFVKRTPFV GATALPA

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.