Factsheet for AT1G73870.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60334	Soybean	nucleus	36.99	39.73
KRH41630	Soybean	nucleus	36.22	38.27
PGSC0003DMT400014362	Potato	nucleus	38.52	37.66
AT1G25440.1	Thale cress	nucleus	39.03	36.69
AT1G68520.1	Thale cress	nucleus	37.24	35.96
KRH48479	Soybean	nucleus	39.03	35.83
Solyc03g119540.2.1	Tomato	nucleus	37.24	35.78
KRH39195	Soybean	nucleus	39.54	32.29
AT1G07050.2	Thale cress	nucleus	15.05	29.8
AT1G49130.1	Thale cress	nucleus	24.74	29.75
AT5G14370.1	Thale cress	nucleus	18.11	20.94
AT4G25990.2	Thale cress	nucleus	18.62	17.85
AT5G57180.2	Thale cress	nucleus, plastid	18.37	16.55

Protein Annotations

MapMan:15.5.1.2	EntrezGene:843723	ProteinID:AAG52532.1	ProteinID:AEE35518.1	ArrayExpress:AT1G73870	EnsemblPlantsGene:AT1G73870
RefSeq:AT1G73870	TAIR:AT1G73870	RefSeq:AT1G73870-TAIR-G	EnsemblPlants:AT1G73870.1	TAIR:AT1G73870.1	EMBL:BT015740
EMBL:BT020183	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009628	GO:GO:0009641	GO:GO:0009653	GO:GO:0009987	GO:GO:0010223	GO:GO:0045893
GO:GO:0046872	InterPro:IPR000315	InterPro:IPR010402	RefSeq:NP_177528.1	PFAM:PF00643	PFAM:PF06203
PO:PO:0000013	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009006	PO:PO:0009025	PO:PO:0009029	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0020030	PO:PO:0020038	PO:PO:0020137	PO:PO:0025022
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF19	UniProt:Q9C9A9	SMART:SM00336
UniParc:UPI000009CB92	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

COL7Zinc finger protein CONSTANS-LIKE 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9A9]

Coordinates

chr1:+:27778984..27780809

Molecular Weight (calculated)

44020.5 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.704

Length

392 amino acids

Sequence
(BLAST)

001: MVVDVESRTA SVTGEKMAAR GCDACMKRSR ASWYCPADDA FLCQSCDASI HSANHLAKRH ERVRLQSSSP TETADKTTSV WYEGFRRKAR TPRSKSCAFE
101: KLLQIESNDP LVPELGGDED DGFFSFSSVE ETEESLNCCV PVFDPFSDML IDDINGFCLV PDEVNNTTTN GELGEVEKAI MDDEGFMGFV PLDMDLEDLT
201: MDVESLLEEE QLCLGFKEPN DVGVIKEENK VGFEINCKDL KRVKDEDEEE EEAKCENGGS KDSDREASND KDRKTSLFLR LDYGAVISAW DNHGSPWKTG
301: IKPECMLGGN TCLPHVVGGY EKLMSSDGSV TRQQGRDGGG SDGEREARVL RYKEKRRTRL FSKKIRYEVR KLNAEQRPRI KGRFVKRTSL LT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.