CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99257
KRH45741
KRH69484
KRH74672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73870.1	KRG99257	AT1G60010.1	21798944
AT1G73870.1	KRH45741	AT1G60010.1	21798944
AT1G73870.1	KRH69484	AT1G60010.1	21798944
AT1G73870.1	KRH74672	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41630	Soybean	nucleus	93.7	92.18
KRH13468	Soybean	cytosol	21.1	77.78
KRH48479	Soybean	nucleus	65.75	56.21
KRH39195	Soybean	nucleus	64.93	49.38
PGSC0003DMT400014362	Potato	nucleus	49.59	45.14
Solyc03g119540.2.1	Tomato	nucleus	48.77	43.63
KRH35955	Soybean	nucleus	47.4	41.29
KRG90815	Soybean	nucleus	45.75	39.95
AT1G73870.1	Thale cress	nucleus	39.73	36.99
KRH17099	Soybean	nucleus	18.08	30.0
KRH72745	Soybean	nucleus	16.71	26.52
KRH02778	Soybean	nucleus, plastid	22.19	20.35
KRH19100	Soybean	nucleus	22.19	20.3
KRH07084	Soybean	plastid	19.18	19.77
KRG94369	Soybean	plastid	18.08	18.64
KRH37334	Soybean	nucleus, plastid	18.36	17.91
KRH12328	Soybean	plastid	16.99	15.7

Protein Annotations

EntrezGene:100812563	MapMan:15.5.1.2	EMBL:ACUP02003362	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_05G233700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:K7KRL4	EnsemblPlants:KRH60334	ProteinID:KRH60334
ProteinID:KRH60334.1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874
PANTHER:PTHR31874:SF19	SMART:SM00336	UniParc:UPI000233A9EC	InterPro:Znf_B-box	:	:

Description

hypothetical protein

Coordinates

chr5:+:41087671..41089500

Molecular Weight (calculated)

40834.6 Da

IEP (calculated)

5.360

GRAVY (calculated)

-0.600

Length

365 amino acids

Sequence
(BLAST)

001: MRDMKDAGAL GGKTARACDS CVSRRARWFC AADDAFLCHG CDTLVHSANQ LASRHERVRL QTASSKVTTT HAWHSGFTRK ARTPRHNSKH FALQQRLKDE
101: VLFNNTSVLP LVPELGGEEQ EPVVVDNDET EEQMLCRVPV FDPFDVRTDD LDSFSDMDFA EFAADVESLL DKEDDEISAC VGGGEGVQGA MVKVKDEEEI
201: DGDVACYLES VFDDAFHWNN IESVLSDARE EKEGVVACDG GVGDEEGGTK RDIFLRLNYD EVITAWSSQG SSPWTTSNPP KFNSDYDFSL GLSGVGGEVR
301: SLRGHLDGGR EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRTCFVGANA FPAYH

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.