Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15597 | Canola | nucleus | 71.21 | 71.94 |
| CDY66177 | Canola | nucleus | 71.21 | 71.57 |
| Bra015548.1-P | Field mustard | nucleus | 72.73 | 70.94 |
| CDY06672 | Canola | nucleus | 71.72 | 70.3 |
| CDY10244 | Canola | nucleus | 71.72 | 70.3 |
| VIT_06s0004g07210.t01 | Wine grape | nucleus | 31.31 | 61.39 |
| KRH17099 | Soybean | nucleus | 48.99 | 44.09 |
| KRH72745 | Soybean | nucleus | 48.48 | 41.74 |
| AT5G14370.1 | Thale cress | nucleus | 31.31 | 18.29 |
| AT1G49130.1 | Thale cress | nucleus | 28.79 | 17.48 |
| AT1G73870.1 | Thale cress | nucleus | 29.8 | 15.05 |
| AT1G68520.1 | Thale cress | nucleus | 27.27 | 13.3 |
| AT1G25440.1 | Thale cress | nucleus | 27.27 | 12.95 |
| AT5G57180.2 | Thale cress | nucleus, plastid | 27.27 | 12.41 |
| AT4G25990.2 | Thale cress | nucleus | 25.25 | 12.22 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837216 | UniProt:A0A178WDK9 | UniProt:A0A1P8ANW9 | ProteinID:ANM58340.1 | ArrayExpress:AT1G07050 |
| EnsemblPlantsGene:AT1G07050 | RefSeq:AT1G07050 | TAIR:AT1G07050 | RefSeq:AT1G07050-TAIR-G | EnsemblPlants:AT1G07050.2 | Unigene:At.42316 |
| InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR010402 | RefSeq:NP_001320785.1 | ProteinID:OAP16497.1 | PFAM:PF06203 |
| PFscan:PS51017 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF18 | UniParc:UPI0007E28E65 | SEG:seg | : |
Description
CCT motif family protein [Source:TAIR;Acc:AT1G07050]
Coordinates
chr1:-:2163575..2165261
Molecular Weight (calculated)
23582.0 Da
IEP (calculated)
4.563
GRAVY (calculated)
-1.108
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTQRLPKKE EEEEEDHLLS STFESINGHS RDQHNHSIDD FESIFDITID NLSCSNELTW DFWEEDEDED VGEEEKRSST DQEGSSFGFW ENKPTDYEDK
101: DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKVSF LFLLLSTL
101: DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKVSF LFLLLSTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.