Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032273.1-P | Field mustard | nucleus | 69.02 | 71.66 |
| CDY66242 | Canola | nucleus | 69.02 | 71.66 |
| AT1G07050.2 | Thale cress | nucleus | 17.48 | 28.79 |
| AT1G73870.1 | Thale cress | nucleus | 29.75 | 24.74 |
| AT1G68520.1 | Thale cress | nucleus | 29.14 | 23.4 |
| AT1G25440.1 | Thale cress | nucleus | 29.45 | 23.02 |
| AT5G14370.1 | Thale cress | nucleus | 18.71 | 17.99 |
| AT4G25990.2 | Thale cress | nucleus | 16.87 | 13.45 |
| AT5G57180.2 | Thale cress | nucleus, plastid | 17.79 | 13.33 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:841336 | ProteinID:AEE32393.1 | ArrayExpress:AT1G49130 | EnsemblPlantsGene:AT1G49130 | RefSeq:AT1G49130 |
| TAIR:AT1G49130 | RefSeq:AT1G49130-TAIR-G | EnsemblPlants:AT1G49130.1 | TAIR:AT1G49130.1 | InterPro:CCT_domain | UniProt:F4I1N0 |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000315 | InterPro:IPR010402 | RefSeq:NP_175339.2 |
| PFAM:PF00643 | PFAM:PF06203 | PO:PO:0000293 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 |
| PANTHER:PTHR31874:SF19 | SMART:SM00336 | UniParc:UPI000019702F | InterPro:Znf_B-box | SEG:seg | : |
Description
B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I1N0]
Coordinates
chr1:-:18174373..18176389
Molecular Weight (calculated)
38318.7 Da
IEP (calculated)
6.434
GRAVY (calculated)
-1.050
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSHQNIKIS EKIMISKYQE DVKQPRACEL CLNKHAVWYC ASDDAFLCHV CDESVHSANH VATKHERVCL RTNEISNDVR GGTTLTSVWH SGFRRKARTP
101: RSRYEKKPQQ KIDDERRRED PRVPEIGGEV MFFIPEANDD DMTSLVPEFE GFTEMGFFLS NHNGTEETTK QFNFEEEADT MEDLYYNGEE EDKTDGAEAC
201: PGQYLMSCKK DYDNVITVSE KTEEIEDCYE NNARHRLNYE NVIAAWDKQE SPRDVKNNTS SFQLVPPGIE EKRVRSEREA RVWRYRDKRK NRLFEKKIRY
301: EVRKVNADKR PRMKGRFVRR SLAIDS
101: RSRYEKKPQQ KIDDERRRED PRVPEIGGEV MFFIPEANDD DMTSLVPEFE GFTEMGFFLS NHNGTEETTK QFNFEEEADT MEDLYYNGEE EDKTDGAEAC
201: PGQYLMSCKK DYDNVITVSE KTEEIEDCYE NNARHRLNYE NVIAAWDKQE SPRDVKNNTS SFQLVPPGIE EKRVRSEREA RVWRYRDKRK NRLFEKKIRY
301: EVRKVNADKR PRMKGRFVRR SLAIDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.