Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04231 | Canola | mitochondrion | 9.61 | 88.64 |
| CDY04230 | Canola | nucleus | 43.84 | 77.39 |
| CDX81527 | Canola | nucleus | 75.86 | 76.81 |
| CDY44890 | Canola | nucleus | 75.62 | 76.56 |
| Bra033925.1-P | Field mustard | nucleus | 75.37 | 76.31 |
| Bra004035.1-P | Field mustard | nucleus | 78.57 | 67.3 |
| AT1G25440.1 | Thale cress | nucleus | 63.3 | 61.63 |
| KRH13468 | Soybean | cytosol | 13.55 | 55.56 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 48.28 | 45.37 |
| KRH35955 | Soybean | nucleus | 45.57 | 44.15 |
| KRG90815 | Soybean | nucleus | 45.32 | 44.02 |
| GSMUA_Achr10P... | Banana | nucleus | 39.16 | 41.62 |
| GSMUA_Achr10P... | Banana | nucleus | 35.47 | 41.03 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 33.5 | 40.84 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 37.93 | 40.63 |
| Solyc04g007210.2.1 | Tomato | nucleus | 42.12 | 39.95 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 35.96 | 39.78 |
| Solyc05g009310.2.1 | Tomato | nucleus | 42.12 | 39.13 |
| PGSC0003DMT400037755 | Potato | nucleus | 42.12 | 38.26 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 39.9 | 37.5 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 39.66 | 37.27 |
| AT1G73870.1 | Thale cress | nucleus | 35.96 | 37.24 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 39.16 | 36.81 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 40.39 | 36.28 |
| Zm00001d045661_P001 | Maize | nucleus | 40.39 | 35.96 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 35.71 | 35.37 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 35.71 | 35.37 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 36.95 | 35.21 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 35.47 | 35.12 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 36.95 | 35.05 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 35.47 | 35.04 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 37.19 | 34.79 |
| EER88191 | Sorghum | nucleus, plastid | 40.39 | 34.6 |
| Os03t0711100-01 | Rice | plastid | 35.47 | 34.2 |
| Os02t0731700-02 | Rice | nucleus | 37.93 | 34.07 |
| Zm00001d013443_P001 | Maize | plastid | 34.24 | 33.66 |
| Os06t0264200-00 | Rice | plastid | 39.66 | 33.47 |
| Zm00001d017939_P001 | Maize | nucleus | 38.18 | 33.33 |
| EER93585 | Sorghum | plastid | 34.24 | 33.1 |
| EES05581 | Sorghum | nucleus, plastid | 38.92 | 32.38 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 37.44 | 30.52 |
| Zm00001d033719_P001 | Maize | plastid | 33.99 | 29.3 |
| AT1G49130.1 | Thale cress | nucleus | 23.4 | 29.14 |
| PGSC0003DMT400020030 | Potato | nucleus | 38.92 | 28.06 |
| AT1G07050.2 | Thale cress | nucleus | 13.3 | 27.27 |
| AT5G14370.1 | Thale cress | nucleus | 16.5 | 19.76 |
| AT4G25990.2 | Thale cress | nucleus | 18.72 | 18.58 |
| AT5G57180.2 | Thale cress | nucleus, plastid | 19.7 | 18.39 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:843181 | UniProt:A0A178WLD4 | ProteinID:AAG52391.1 | ProteinID:AEE34802.1 | ArrayExpress:AT1G68520 |
| EnsemblPlantsGene:AT1G68520 | RefSeq:AT1G68520 | TAIR:AT1G68520 | RefSeq:AT1G68520-TAIR-G | EnsemblPlants:AT1G68520.1 | TAIR:AT1G68520.1 |
| EMBL:AY054625 | EMBL:AY081541 | EMBL:AY084427 | InterPro:CCT_domain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR010402 | RefSeq:NP_564932.1 |
| ProteinID:OAP18994.1 | PFAM:PF00643 | PFAM:PF06203 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF21 |
| UniProt:Q8LG76 | SMART:SM00336 | UniParc:UPI00000A15D3 | InterPro:Znf_B-box | SEG:seg | : |
Description
COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
Coordinates
chr1:-:25708175..25710989
Molecular Weight (calculated)
46062.1 Da
IEP (calculated)
5.488
GRAVY (calculated)
-0.776
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.