Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G209000.1 | Wheat | nucleus | 98.84 | 98.84 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 97.69 | 97.69 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 65.97 | 63.05 |
| Os06t0264200-00 | Rice | plastid | 69.68 | 62.58 |
| Zm00001d045661_P001 | Maize | nucleus | 64.81 | 61.4 |
| CDY04231 | Canola | mitochondrion | 6.25 | 61.36 |
| EER88191 | Sorghum | nucleus, plastid | 66.9 | 60.97 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 54.4 | 55.16 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 42.82 | 50.41 |
| KRH13468 | Soybean | cytosol | 11.11 | 48.48 |
| GSMUA_Achr10P... | Banana | nucleus | 37.04 | 45.58 |
| CDY65591 | Canola | nucleus | 35.19 | 43.68 |
| CDY67920 | Canola | nucleus | 34.95 | 43.39 |
| CDY03851 | Canola | nucleus | 37.27 | 43.28 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 42.59 | 42.59 |
| KRH35955 | Soybean | nucleus | 41.2 | 42.48 |
| KRG90815 | Soybean | nucleus | 40.97 | 42.34 |
| CDX77359 | Canola | nucleus | 15.51 | 41.88 |
| Solyc04g007210.2.1 | Tomato | nucleus | 40.97 | 41.36 |
| AT1G25440.1 | Thale cress | nucleus | 39.58 | 41.01 |
| CDY51133 | Canola | nucleus | 35.65 | 40.85 |
| CDY53119 | Canola | nucleus | 35.42 | 40.69 |
| Bra012475.1-P | Field mustard | nucleus | 38.43 | 40.69 |
| CDX81527 | Canola | nucleus | 37.73 | 40.65 |
| CDY44890 | Canola | nucleus | 37.73 | 40.65 |
| Bra033925.1-P | Field mustard | nucleus | 37.5 | 40.4 |
| Bra024750.1-P | Field mustard | nucleus | 38.66 | 40.34 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 37.96 | 40.0 |
| AT1G68520.1 | Thale cress | nucleus | 37.27 | 39.66 |
| CDY04230 | Canola | nucleus | 21.06 | 39.57 |
| Solyc05g009310.2.1 | Tomato | nucleus | 39.81 | 39.36 |
| CDY24402 | Canola | nucleus | 33.1 | 38.75 |
| PGSC0003DMT400037755 | Potato | nucleus | 39.35 | 38.03 |
| Bra004035.1-P | Field mustard | nucleus | 36.34 | 33.12 |
| CDY36106 | Canola | nucleus | 28.94 | 32.55 |
| Bra010994.1-P | Field mustard | nucleus | 29.86 | 31.7 |
| PGSC0003DMT400020030 | Potato | nucleus | 37.27 | 28.6 |
| TraesCS7A01G314300.1 | Wheat | nucleus | 14.35 | 20.81 |
| TraesCS6A01G118000.1 | Wheat | plastid | 19.68 | 17.28 |
| TraesCS7A01G422200.1 | Wheat | nucleus, plastid | 16.2 | 15.28 |
Protein Annotations
| MapMan:15.5.1.2 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF22 | SMART:SM00336 |
| EnsemblPlantsGene:TraesCS7A01G206200 | EnsemblPlants:TraesCS7A01G206200.1 | InterPro:Znf_B-box | TIGR:cd00021 | SEG:seg | : |
Description
No Description!
Coordinates
chr7A:+:168812344..168814105
Molecular Weight (calculated)
47134.7 Da
IEP (calculated)
5.098
GRAVY (calculated)
-0.526
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCSGKAADG AMGSKAARAC DGCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERV RLRPTSPLLP GAAPRERRRG DEVVPAWFKR KARTPRSQAK
101: SVGRLLSRRL VVPQASGGDS PEEQKCDVET DEEELPYRVP IFDPALAELC SPLTLEEATT AVASCCNEDG AIVEDPTKPA ATPSPVPVQF FPDSLVNLGP
201: TDAELMEFAA DMEALLGRPG MDDGDEEEPF CMEALGLIEP MDVDGGRVKL EIDPMRACGL EQKPEVSGDM FDIDFDYDSP LGTPDENAAS SGASADAQFT
301: PRSLALNLNY EAIMENWGSS PWADGERPHV KLDDCWPHDY YSLQEGAWMM GGVVGHGGEG LGTPRLRMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN
401: AEKRPRMKGR FVKRANGAGG GVPVAIATAC VA
101: SVGRLLSRRL VVPQASGGDS PEEQKCDVET DEEELPYRVP IFDPALAELC SPLTLEEATT AVASCCNEDG AIVEDPTKPA ATPSPVPVQF FPDSLVNLGP
201: TDAELMEFAA DMEALLGRPG MDDGDEEEPF CMEALGLIEP MDVDGGRVKL EIDPMRACGL EQKPEVSGDM FDIDFDYDSP LGTPDENAAS SGASADAQFT
301: PRSLALNLNY EAIMENWGSS PWADGERPHV KLDDCWPHDY YSLQEGAWMM GGVVGHGGEG LGTPRLRMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN
401: AEKRPRMKGR FVKRANGAGG GVPVAIATAC VA
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.