Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g006030.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68520.1 | Solyc05g006030.2.1 | AT1G60010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04231 | Canola | mitochondrion | 7.71 | 75.0 |
| PGSC0003DMT400020030 | Potato | nucleus | 86.68 | 65.9 |
| Solyc05g009310.2.1 | Tomato | nucleus | 57.24 | 56.06 |
| KRH13468 | Soybean | cytosol | 12.85 | 55.56 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 53.97 | 53.47 |
| CDY03851 | Canola | nucleus | 41.12 | 47.31 |
| CDY65591 | Canola | nucleus | 38.32 | 47.13 |
| CDY67920 | Canola | nucleus | 38.08 | 46.84 |
| GSMUA_Achr10P... | Banana | nucleus | 37.85 | 46.15 |
| Solyc03g119540.2.1 | Tomato | nucleus | 43.22 | 45.34 |
| CDY51133 | Canola | nucleus | 39.49 | 44.83 |
| Bra012475.1-P | Field mustard | nucleus | 42.52 | 44.61 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 38.08 | 44.41 |
| CDX77359 | Canola | nucleus | 16.59 | 44.38 |
| AT1G25440.1 | Thale cress | nucleus | 43.22 | 44.36 |
| CDY53119 | Canola | nucleus | 38.78 | 44.15 |
| Bra024750.1-P | Field mustard | nucleus | 42.52 | 43.96 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 38.55 | 43.54 |
| CDY44890 | Canola | nucleus | 40.65 | 43.39 |
| CDX81527 | Canola | nucleus | 40.65 | 43.39 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 33.64 | 43.24 |
| Bra033925.1-P | Field mustard | nucleus | 40.19 | 42.89 |
| GSMUA_Achr10P... | Banana | nucleus | 37.85 | 42.41 |
| AT1G68520.1 | Thale cress | nucleus | 39.95 | 42.12 |
| CDY24402 | Canola | nucleus | 36.22 | 42.01 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 41.82 | 41.44 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 41.36 | 40.97 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 41.36 | 40.97 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 39.02 | 39.2 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 39.72 | 39.17 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 39.02 | 39.02 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 40.89 | 38.72 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 36.68 | 38.29 |
| CDY04230 | Canola | nucleus | 20.56 | 38.26 |
| Os02t0731700-02 | Rice | nucleus | 39.72 | 37.61 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 35.98 | 37.56 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 35.98 | 37.56 |
| Os03t0711100-01 | Rice | plastid | 36.92 | 37.53 |
| Zm00001d045661_P001 | Maize | nucleus | 39.95 | 37.5 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 35.98 | 37.47 |
| Os06t0264200-00 | Rice | plastid | 42.06 | 37.42 |
| EER88191 | Sorghum | nucleus, plastid | 41.36 | 37.34 |
| Bra004035.1-P | Field mustard | nucleus | 40.89 | 36.92 |
| Zm00001d013443_P001 | Maize | plastid | 34.81 | 36.08 |
| CDY36106 | Canola | nucleus | 32.24 | 35.94 |
| Zm00001d017939_P001 | Maize | nucleus | 38.55 | 35.48 |
| EER93585 | Sorghum | plastid | 34.81 | 35.48 |
| Bra010994.1-P | Field mustard | nucleus | 33.18 | 34.89 |
| EES05581 | Sorghum | nucleus, plastid | 39.02 | 34.22 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 38.55 | 33.13 |
| Zm00001d033719_P001 | Maize | plastid | 35.05 | 31.85 |
| Solyc02g093590.2.1 | Tomato | nucleus | 15.89 | 21.25 |
| Solyc07g008540.2.1 | Tomato | nucleus, plastid | 18.46 | 18.29 |
Protein Annotations
| MapMan:15.5.1.2 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 |
| UniProt:K4BNM8 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 |
| PANTHER:PTHR31874:SF21 | SMART:SM00336 | EnsemblPlantsGene:Solyc04g007210.2 | EnsemblPlants:Solyc04g007210.2.1 | UniParc:UPI00027667D0 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:904265..906430
Molecular Weight (calculated)
48721.9 Da
IEP (calculated)
5.130
GRAVY (calculated)
-0.774
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSEKKLANA MGAKTARACD NCIRKRARWY CAADDAFLCQ SCDSSVHSAN PLARRHERVR LKTSSFKSSD DFPNLESTVS GLGSGSGSGS DSIPSWHCGF
101: TRKARTPRYG NKHAKRVKST EEEEEEEEMK NPIQLVVPEI LSDENSHDEN EEEQLLYRVP IFDPFMADGS NYGNEYSSNK VDFNQDMNTF QGLLAPSEME
201: LAEFAADVVS LLGKGLDDEE SFNYMEGLGF LEKHDEKLVK VEDEGEVGFV NMISTNNQVD YSEFDMVGET FELKFDYDSQ VINNLDEDNK KVEFLEINYD
301: SGKNNNKIML NLDYESVLKS WGDKRFPWTT GVRPEVDFND CWPVCMGNCG KIHSYGDIAI MNGHGGGVVD EGREARVLRY KEKRRTRLFS KKIRYEVRKL
401: NAEKRPRMKG RFVKRTNFAP TPFPSLNK
101: TRKARTPRYG NKHAKRVKST EEEEEEEEMK NPIQLVVPEI LSDENSHDEN EEEQLLYRVP IFDPFMADGS NYGNEYSSNK VDFNQDMNTF QGLLAPSEME
201: LAEFAADVVS LLGKGLDDEE SFNYMEGLGF LEKHDEKLVK VEDEGEVGFV NMISTNNQVD YSEFDMVGET FELKFDYDSQ VINNLDEDNK KVEFLEINYD
301: SGKNNNKIML NLDYESVLKS WGDKRFPWTT GVRPEVDFND CWPVCMGNCG KIHSYGDIAI MNGHGGGVVD EGREARVLRY KEKRRTRLFS KKIRYEVRKL
401: NAEKRPRMKG RFVKRTNFAP TPFPSLNK
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.