Factsheet for Zm00001d017939_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017998_P001
Zm00001d020348_P001
Zm00001d032324_P001
Zm00001d037251_P001
Zm00001d044783_P001
Zm00001d052277_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Zm00001d017998_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d020348_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d032324_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d037251_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d044783_P001	AT1G60010.1	21798944
AT1G68520.1	Zm00001d052277_P001	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05581	Sorghum	nucleus, plastid	88.6	84.43
Os02t0731700-02	Rice	nucleus	64.52	66.37
CDY04231	Canola	mitochondrion	6.24	65.91
TraesCS6B01G323400.1	Wheat	nucleus	58.92	64.02
TraesCS6A01G293200.1	Wheat	nucleus	57.85	63.15
TraesCS6D01G274100.1	Wheat	nucleus	58.92	63.13
Zm00001d037327_P001	Maize	mitochondrion, nucleus	54.19	55.75
HORVU6Hr1G073170.1	Barley	nucleus	58.92	55.02
Zm00001d045661_P001	Maize	nucleus	52.69	53.73
GSMUA_Achr4P30670_001	Banana	nucleus	40.65	51.5
KRH13468	Soybean	cytosol	10.32	48.48
GSMUA_Achr10P...	Banana	nucleus	32.9	43.59
CDY65591	Canola	nucleus	32.04	42.82
CDY67920	Canola	nucleus	31.83	42.53
KRH35955	Soybean	nucleus	38.06	42.24
CDY03851	Canola	nucleus	33.76	42.2
VIT_01s0011g03520.t01	Wine grape	nucleus	38.49	41.44
CDX77359	Canola	nucleus	13.98	40.62
KRG90815	Soybean	nucleus	36.13	40.19
CDY51133	Canola	nucleus	32.26	39.79
CDY53119	Canola	nucleus	32.04	39.63
Bra012475.1-P	Field mustard	nucleus	34.62	39.46
Bra024750.1-P	Field mustard	nucleus	34.84	39.13
AT1G25440.1	Thale cress	nucleus	34.62	38.61
Solyc04g007210.2.1	Tomato	nucleus	35.48	38.55
CDY44890	Canola	nucleus	33.12	38.4
Bra033925.1-P	Field mustard	nucleus	33.12	38.4
CDY24402	Canola	nucleus	30.32	38.21
AT1G68520.1	Thale cress	nucleus	33.33	38.18
CDX81527	Canola	nucleus	32.69	37.91
Zm00001d013443_P001	Maize	plastid	33.55	37.77
PGSC0003DMT400037755	Potato	nucleus	35.27	36.69
Solyc05g009310.2.1	Tomato	nucleus	34.19	36.38
CDY04230	Canola	nucleus	17.85	36.09
Zm00001d033719_P001	Maize	plastid	34.19	33.76
CDY36106	Canola	nucleus	26.88	32.55
Bra010994.1-P	Field mustard	nucleus	27.96	31.94
Bra004035.1-P	Field mustard	nucleus	31.4	30.8
PGSC0003DMT400020030	Potato	nucleus	31.83	26.29
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	13.33	22.88
Zm00001d035134_P001	Maize	plastid	13.12	22.85
Zm00001d053880_P001	Maize	plastid	17.63	17.34
Zm00001d015268_P001	Maize	plastid	16.13	15.89
Zm00001d014664_P001	Maize	plastid	12.9	13.79

Protein Annotations

MapMan:15.5.1.2	UniProt:A0A1D6HJB4	ProteinID:AQK74568.1	InterPro:CCT_domain	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF22	SMART:SM00336	UniParc:UPI000844DABD	EnsemblPlantsGene:Zm00001d017939
EnsemblPlants:Zm00001d017939_P001	EnsemblPlants:Zm00001d017939_T001	InterPro:Znf_B-box	SEG:seg	:	:

Description

2C2-CO-like-transcription factor 12Zinc finger protein CONSTANS-LIKE 7

Coordinates

chr5:-:210407150..210409118

Molecular Weight (calculated)

50509.4 Da

IEP (calculated)

6.001

GRAVY (calculated)

-0.576

Length

465 amino acids

Sequence
(BLAST)

001: MSSSKHAAGA VGGKAARACD SCLRRRARWY CAADDAFLCQ GCDASVHSAN PLARRHERLR LRPTDPHSTT LEAGVATATW KKRQQQVAPA WSKRKARTRR
101: PHVKSVGELL SRKLVVVPEV SPIESSEERK AEEEEEEEEG QLLYCVPTFD RALAELCSPP PPVDDPTASS CCRDDVDGAV ENNTKAPPVV VAESPVQQLP
201: DSFAGFGPTD AELREFAADM EALLGQGLDD GNELDRSFYM ESLGLMAQQA EDVGRIKMEP NGIVSSRSRG EGAPGFGPTE MKPEASSAAA EVLDTDFNCC
301: SPTVMMDNED EDSFEQKASA SNAAAAAAGT QFLKRSLDLS LNYEAIIESW GSSPWTDGQR PSVQLDDFWP HAHLTVCVQG WMAGGGRLGG EAAVTPRLGM
401: GGGREARVTR YREKRRTRLF AKKIRYEVRK LNAEKRPRMK GRFVKRPAAA AGGGGEELPL PPPNL

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.