Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51133 | Canola | nucleus | 82.5 | 35.01 |
| CDY53119 | Canola | nucleus | 81.88 | 34.84 |
| CDY07383 | Canola | cytosol | 50.0 | 34.78 |
| CDY04230 | Canola | nucleus | 50.0 | 34.78 |
| CDY03851 | Canola | nucleus | 75.62 | 32.53 |
| CDY67920 | Canola | nucleus | 65.62 | 30.17 |
| CDX70561 | Canola | nucleus | 28.12 | 29.8 |
| CDY65591 | Canola | nucleus | 64.38 | 29.6 |
| AT1G25440.1 | Thale cress | nucleus | 73.75 | 28.3 |
| CDY15597 | Canola | nucleus | 30.0 | 24.49 |
| CDY66177 | Canola | nucleus | 30.0 | 24.37 |
| CDY06672 | Canola | nucleus | 29.38 | 23.27 |
| CDY10244 | Canola | nucleus | 28.75 | 22.77 |
| CDY24402 | Canola | nucleus | 50.0 | 21.68 |
| CDX81527 | Canola | nucleus | 51.88 | 20.7 |
| CDY44890 | Canola | nucleus | 51.88 | 20.7 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 41.25 | 19.82 |
| CDY42769 | Canola | nucleus | 28.12 | 19.31 |
| KRH35955 | Soybean | nucleus | 47.5 | 18.14 |
| GSMUA_Achr10P... | Banana | nucleus | 39.38 | 17.95 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 48.12 | 17.82 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 40.0 | 17.44 |
| KRG90815 | Soybean | nucleus | 45.0 | 17.22 |
| Solyc05g009310.2.1 | Tomato | nucleus | 46.25 | 16.93 |
| PGSC0003DMT400037755 | Potato | nucleus | 46.88 | 16.78 |
| Solyc04g007210.2.1 | Tomato | nucleus | 44.38 | 16.59 |
| GSMUA_Achr10P... | Banana | nucleus | 39.38 | 16.49 |
| CDY66242 | Canola | nucleus | 31.88 | 16.24 |
| CDX78575 | Canola | nucleus | 30.0 | 15.95 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 40.62 | 15.85 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 40.62 | 15.85 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 40.62 | 15.85 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 40.62 | 15.82 |
| Os03t0711100-01 | Rice | plastid | 41.25 | 15.68 |
| CDY36106 | Canola | nucleus | 37.5 | 15.62 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 36.88 | 15.57 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 41.88 | 15.51 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 41.88 | 15.51 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 41.88 | 15.51 |
| Zm00001d013443_P001 | Maize | plastid | 40.0 | 15.5 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 43.75 | 15.49 |
| CDX69586 | Canola | nucleus, plastid | 31.25 | 15.15 |
| EER93585 | Sorghum | plastid | 39.38 | 15.0 |
| CDY09849 | Canola | nucleus | 30.62 | 14.8 |
| CDX85600 | Canola | nucleus | 29.38 | 14.78 |
| EER88191 | Sorghum | nucleus, plastid | 43.75 | 14.77 |
| Zm00001d045661_P001 | Maize | nucleus | 41.88 | 14.69 |
| Os06t0264200-00 | Rice | plastid | 43.75 | 14.55 |
| CDX91067 | Canola | nucleus | 29.38 | 14.55 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 38.12 | 14.25 |
| Os02t0731700-02 | Rice | nucleus | 40.0 | 14.16 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 37.5 | 14.08 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 38.12 | 14.06 |
| Zm00001d017939_P001 | Maize | nucleus | 40.62 | 13.98 |
| CDY52734 | Canola | nucleus, plastid | 34.38 | 13.82 |
| CDY38274 | Canola | nucleus, plastid | 33.75 | 13.6 |
| Zm00001d033719_P001 | Maize | plastid | 40.0 | 13.59 |
| EES05581 | Sorghum | nucleus, plastid | 40.62 | 13.32 |
| CDY42238 | Canola | nucleus | 31.25 | 12.95 |
| CDY47926 | Canola | nucleus | 31.25 | 12.76 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 38.12 | 12.25 |
| CDX89377 | Canola | plastid | 28.75 | 12.04 |
| CDX94392 | Canola | plastid | 28.75 | 11.98 |
| CDX92740 | Canola | plastid | 27.5 | 11.08 |
| PGSC0003DMT400020030 | Potato | nucleus | 35.62 | 10.12 |
| KRH13468 | Soybean | cytosol | 2.5 | 4.04 |
| CDY04231 | Canola | mitochondrion | 0.62 | 2.27 |
| CDY07382 | Canola | nucleus | 0.62 | 2.27 |
Protein Annotations
| EnsemblPlants:CDX77359 | EnsemblPlantsGene:GSBRNA2T00128166001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF21 | PFAM:PF06203 | PFscan:PS51017 | ProteinID:CDX77359 |
| ProteinID:CDX77359.1 | SEG:seg | UniParc:UPI0004EE5156 | MapMan:15.5.1.2 | : | : |
Description
BnaC08g04040D
Coordinates
chrLK031810:+:2112180..2112923
Molecular Weight (calculated)
18875.5 Da
IEP (calculated)
10.178
GRAVY (calculated)
-0.766
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVFIDDFSV YNTYEEEVIK KIEGSGECVK VKEEEKKNVL MLRLNYDSVI STWGGQGPPW TSGEPPERDI DISSWPFVSM RKSAEASRWW MFTFEWVWDG
101: GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRASLAVS AMNSPSGVNY
101: GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRASLAVS AMNSPSGVNY
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.