CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04230	Canola	nucleus	79.13	79.13
CDX77359	Canola	nucleus	34.78	50.0
CDX81527	Canola	nucleus	82.61	47.38
CDY44890	Canola	nucleus	82.61	47.38
CDY67920	Canola	nucleus	54.78	36.21
CDY65591	Canola	nucleus	54.78	36.21
CDY03851	Canola	nucleus	56.96	35.22
CDY53119	Canola	nucleus	53.91	32.98
CDY51133	Canola	nucleus	53.48	32.63
CDX70561	Canola	nucleus	19.57	29.8
CDY24402	Canola	nucleus	46.52	29.0
CDY15597	Canola	nucleus	21.3	25.0
KRH17099	Soybean	nucleus	23.91	25.0
CDY66177	Canola	nucleus	21.3	24.87
CDY06672	Canola	nucleus	20.87	23.76
CDY10244	Canola	nucleus	20.87	23.76
CDY36106	Canola	nucleus	38.26	22.92
KRH72745	Soybean	nucleus	22.17	22.17
CDY42769	Canola	nucleus	20.0	19.74
CDY09849	Canola	nucleus	25.22	17.52
CDX78575	Canola	nucleus	22.61	17.28
CDX69586	Canola	nucleus, plastid	24.78	17.27
CDY66242	Canola	nucleus	23.48	17.2
CDX85600	Canola	nucleus	23.48	16.98
CDX91067	Canola	nucleus	23.48	16.72
CDY38274	Canola	nucleus, plastid	26.09	15.11
CDY47926	Canola	nucleus	25.65	15.05
CDX89377	Canola	plastid	24.78	14.92
CDY42238	Canola	nucleus	24.78	14.77
CDX94392	Canola	plastid	23.91	14.32
CDY52734	Canola	nucleus, plastid	24.78	14.32
CDX92740	Canola	plastid	22.17	12.85
CDY04231	Canola	mitochondrion	0.43	2.27
CDY07382	Canola	nucleus	0.43	2.27

Protein Annotations

MapMan:15.5.1.2	UniProt:A0A078F6V7	InterPro:CCT_domain	EnsemblPlants:CDY07383	ProteinID:CDY07383	ProteinID:CDY07383.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00124364001	InterPro:IPR010402	PFAM:PF06203	PFscan:PS51017	PANTHER:PTHR31874
PANTHER:PTHR31874:SF21	UniParc:UPI0004EDE415	SEG:seg	:	:	:

Description

BnaA07g24620DBnaA07g24620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6V7]

Coordinates

chrLK031978:+:353864..355246

Molecular Weight (calculated)

26494.6 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.697

Length

230 amino acids

Sequence
(BLAST)

001: MVFHDLVPEM SSEDQRYEVE EQLIFEVPVL NPMDDNTESC LNGLFPTEME LAQFSADVET LLGGGTDREF HAMEEIGFGE MLKIEKEEVK EEEEVATREV
101: TGRIKEEKKE KVLMLRLDYE TVISTWGSQG TPWTALKPSE IDLDMLCCQT NSMCESGGEA HHHNHFPGLG LHMREAGDGG REARVSRYRE KRRTRLFSKK
201: IRYEVRKLNA EKRPRMKGRF VKRSSIVAAH

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.