Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023462.1-P | Field mustard | nucleus | 50.0 | 100.0 |
| Bra023461.1-P | Field mustard | cytosol | 45.6 | 94.77 |
| CDX91067 | Canola | nucleus | 95.28 | 93.81 |
| CDX70561 | Canola | nucleus | 41.51 | 87.42 |
| CDY09849 | Canola | nucleus | 79.56 | 76.44 |
| CDX69586 | Canola | nucleus, plastid | 78.93 | 76.06 |
| AT5G14370.1 | Thale cress | nucleus | 79.56 | 74.63 |
| CDX78575 | Canola | nucleus | 70.13 | 74.09 |
| VIT_14s0219g00220.t01 | Wine grape | nucleus, plastid | 41.82 | 42.9 |
| GSMUA_Achr11P... | Banana | nucleus | 24.21 | 40.74 |
| HORVU2Hr1G056960.1 | Barley | peroxisome | 12.26 | 37.14 |
| KRH07084 | Soybean | plastid | 37.74 | 33.9 |
| GSMUA_Achr10P... | Banana | nucleus | 29.56 | 32.64 |
| KRG94369 | Soybean | plastid | 36.16 | 32.49 |
| CDY66177 | Canola | nucleus | 19.81 | 31.98 |
| CDY15597 | Canola | nucleus | 19.5 | 31.63 |
| Solyc02g093590.2.1 | Tomato | nucleus | 31.76 | 31.56 |
| CDY06672 | Canola | nucleus | 19.81 | 31.19 |
| PGSC0003DMT400032849 | Potato | nucleus | 31.13 | 30.65 |
| CDX77359 | Canola | nucleus | 14.78 | 29.38 |
| CDY10244 | Canola | nucleus | 18.55 | 29.21 |
| Zm00001d049651_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 23.27 | 27.31 |
| KXG24303 | Sorghum | mitochondrion, nucleus | 25.16 | 27.12 |
| Zm00001d035134_P001 | Maize | plastid | 22.64 | 26.97 |
| TraesCS7D01G311500.1 | Wheat | nucleus | 24.53 | 26.9 |
| TraesCS7B01G215100.1 | Wheat | nucleus | 24.53 | 26.44 |
| TraesCS7A01G314300.1 | Wheat | nucleus | 24.21 | 25.84 |
| CDY42769 | Canola | nucleus | 17.61 | 24.03 |
| CDY07383 | Canola | cytosol | 16.98 | 23.48 |
| Os08t0119700-00 | Rice | plastid | 25.47 | 22.88 |
| CDY04230 | Canola | nucleus | 16.35 | 22.61 |
| HORVU7Hr1G074960.1 | Barley | nucleus | 13.52 | 19.03 |
| CDY66242 | Canola | nucleus | 18.24 | 18.47 |
| CDY42238 | Canola | nucleus | 21.7 | 17.88 |
| CDY47926 | Canola | nucleus | 21.7 | 17.6 |
| CDY65591 | Canola | nucleus | 19.18 | 17.53 |
| CDY03851 | Canola | nucleus | 20.44 | 17.47 |
| CDY67920 | Canola | nucleus | 18.87 | 17.24 |
| CDX89377 | Canola | plastid | 20.44 | 17.02 |
| CDY53119 | Canola | nucleus | 19.81 | 16.76 |
| CDY51133 | Canola | nucleus | 19.81 | 16.71 |
| CDY44890 | Canola | nucleus | 21.07 | 16.71 |
| CDX81527 | Canola | nucleus | 21.07 | 16.71 |
| CDY52734 | Canola | nucleus, plastid | 20.75 | 16.58 |
| CDX94392 | Canola | plastid | 19.5 | 16.15 |
| CDY38274 | Canola | nucleus, plastid | 20.13 | 16.12 |
| CDY24402 | Canola | nucleus | 18.24 | 15.72 |
| CDX92740 | Canola | plastid | 19.18 | 15.37 |
| HORVU7Hr1G074920.1 | Barley | extracellular, mitochondrion | 14.15 | 15.1 |
| CDY36106 | Canola | nucleus | 14.15 | 11.72 |
| CDY04231 | Canola | mitochondrion | 0.63 | 4.55 |
| CDY07382 | Canola | nucleus | 0.63 | 4.55 |
Protein Annotations
| EnsemblPlants:CDX85600 | EnsemblPlantsGene:GSBRNA2T00143324001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF18 | PFAM:PF06203 | PFscan:PS51017 | ProteinID:CDX85600 |
| ProteinID:CDX85600.1 | SEG:seg | UniParc:UPI0004EEB124 | MapMan:35.1 | : | : |
Description
BnaA02g02130D
Coordinates
chrLK031842:+:836982..838805
Molecular Weight (calculated)
35619.8 Da
IEP (calculated)
9.027
GRAVY (calculated)
-0.966
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSEPSPVVG EETRTSKRIK KRKHIAMDDS SPSNLETSRK QIRTKTKKPK FLSLKLELNT SHEIDESPET TTNKKKQSKT RGGAEKKRVE TVGGGEKEED
101: QYDTVAAYLF NSTTDNSTIS SIHDLLPSST ADVDCGGEGR DMSPYDIKEH GSTSASSLLR TAMRKGASKE ETTAERWVSY SEVVDEVMSR SGTPRCCGGD
201: GKDGRTSLAL KLDYEEIMEA WPDKGTLYVD GEPPQTVPDL HASTYVVTGG GEAGSLWTVP EMETTESLWR GHREASLLRY KEKRQSRLFS KRIRYQVRKL
301: NAEKRPRVKG RFVKRDDL
101: QYDTVAAYLF NSTTDNSTIS SIHDLLPSST ADVDCGGEGR DMSPYDIKEH GSTSASSLLR TAMRKGASKE ETTAERWVSY SEVVDEVMSR SGTPRCCGGD
201: GKDGRTSLAL KLDYEEIMEA WPDKGTLYVD GEPPQTVPDL HASTYVVTGG GEAGSLWTVP EMETTESLWR GHREASLLRY KEKRQSRLFS KRIRYQVRKL
301: NAEKRPRVKG RFVKRDDL
001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
Arabidopsis Description
CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.