CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	69.49	75.65
Zm00001d035134_P001	Maize	plastid	61.36	67.79
TraesCS7D01G311500.1	Wheat	nucleus	55.59	56.55
TraesCS7A01G314300.1	Wheat	nucleus	55.59	55.03
TraesCS7B01G215100.1	Wheat	nucleus	54.58	54.58
Os08t0119700-00	Rice	plastid	57.29	47.74
HORVU7Hr1G074960.1	Barley	nucleus	36.27	47.35
HORVU2Hr1G056960.1	Barley	peroxisome	16.61	46.67
HORVU7Hr1G074920.1	Barley	extracellular, mitochondrion	40.34	39.93
GSMUA_Achr11P...	Banana	nucleus	23.39	36.51
CDX70561	Canola	nucleus	17.97	35.1
Bra023461.1-P	Field mustard	cytosol	17.97	34.64
GSMUA_Achr10P...	Banana	nucleus	30.85	31.6
VIT_14s0219g00220.t01	Wine grape	nucleus, plastid	29.49	28.06
Solyc02g093590.2.1	Tomato	nucleus	28.81	26.56
PGSC0003DMT400032849	Potato	nucleus	27.8	25.39
CDX85600	Canola	nucleus	27.12	25.16
CDX69586	Canola	nucleus, plastid	27.46	24.55
CDY09849	Canola	nucleus	27.12	24.17
CDX91067	Canola	nucleus	26.44	24.15
AT5G14370.1	Thale cress	nucleus	26.78	23.3
KRG94369	Soybean	plastid	27.8	23.16
KRH07084	Soybean	plastid	27.8	23.16
Bra006252.1-P	Field mustard	nucleus	22.71	22.26
CDX78575	Canola	nucleus	22.71	22.26
Bra008763.1-P	Field mustard	nucleus, plastid	27.46	15.14
EES04516	Sorghum	plastid	24.07	14.61
EER93585	Sorghum	plastid	20.0	14.05
EER88191	Sorghum	nucleus, plastid	22.03	13.71
EES05581	Sorghum	nucleus, plastid	21.69	13.11
Bra023462.1-P	Field mustard	nucleus	6.78	12.58
KXG20763	Sorghum	plastid	13.9	9.03

Protein Annotations

MapMan:35.2	UniProt:A0A1B6PF44	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR010402	EnsemblPlants:KXG24303
ProteinID:KXG24303	ProteinID:KXG24303.1	PFAM:PF06203	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF6
EnsemblPlantsGene:SORBI_3007G023100	UniParc:UPI00081AB6F0	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:2089124..2091469

Molecular Weight (calculated)

31596.9 Da

IEP (calculated)

9.597

GRAVY (calculated)

-0.697

Length

295 amino acids

Sequence
(BLAST)

001: MASGGRRRPK PRARARARGK AKRTKYLSLS DLMVKAEVAA TPSPPSPPAD PWEEEEAEAE VKREEDAGGD DGGAGRQQQQ VEPFALHNHN EASTLFEALP
101: APSLSDILGP SPSASPDGAG SGASGLPGAQ EEDLARRALR GRERWVYCSS PAATATPTAT ATTSSSSPCS SAASTGASAA RSLLLKLDYE EILAAWADRG
201: SLYIGAAGAS GGGGGDSPEL QLDAVQVLVE MEPADHAVAE LSGRAERVRR YKEKRRRRLF AKRIRYEVRR VNAVKRPRFK GRFIKEHEES ELRPT

Best Arabidopsis Sequence Match ( AT5G14370.1 )
(BLAST)

001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS

Arabidopsis Description

CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.