Factsheet for PGSC0003DMT400032849

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093590.2.1	Tomato	nucleus	88.85	89.69
Bra023461.1-P	Field mustard	cytosol	22.6	47.71
CDX70561	Canola	nucleus	21.98	47.02
VIT_14s0219g00220.t01	Wine grape	nucleus, plastid	43.65	45.48
HORVU2Hr1G056960.1	Barley	peroxisome	12.69	39.05
GSMUA_Achr11P...	Banana	nucleus	21.98	37.57
GSMUA_Achr10P...	Banana	nucleus	31.27	35.07
KRH07084	Soybean	plastid	35.91	32.77
KRG94369	Soybean	plastid	35.91	32.77
AT5G14370.1	Thale cress	nucleus	33.44	31.86
CDX85600	Canola	nucleus	30.65	31.13
CDX69586	Canola	nucleus, plastid	31.58	30.91
CDY09849	Canola	nucleus	31.58	30.82
CDX91067	Canola	nucleus	30.03	30.03
CDX78575	Canola	nucleus	27.86	29.9
Bra006252.1-P	Field mustard	nucleus	27.55	29.57
TraesCS7D01G311500.1	Wheat	nucleus	26.32	29.31
TraesCS7A01G314300.1	Wheat	nucleus	26.32	28.52
TraesCS7B01G215100.1	Wheat	nucleus	26.01	28.47
KXG24303	Sorghum	mitochondrion, nucleus	25.39	27.8
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	22.91	27.31
Zm00001d035134_P001	Maize	plastid	21.98	26.59
Os08t0119700-00	Rice	plastid	25.39	23.16
HORVU7Hr1G074960.1	Barley	nucleus	15.17	21.68
Bra008763.1-P	Field mustard	nucleus, plastid	31.27	18.88
HORVU7Hr1G074920.1	Barley	extracellular, mitochondrion	16.72	18.12
PGSC0003DMT400059170	Potato	plastid	21.67	16.2
PGSC0003DMT400014362	Potato	nucleus	18.27	14.71
PGSC0003DMT400037755	Potato	nucleus	20.12	14.54
Bra023462.1-P	Field mustard	nucleus	6.81	13.84
PGSC0003DMT400020030	Potato	nucleus	16.1	9.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400032849	EnsemblPlantsGene:PGSC0003DMG400012618	EntrezGene:102586988	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402
PANTHER:PTHR31874	PANTHER:PTHR31874:SF18	PFAM:PF06203	PFscan:PS51017	PGSC:PGSC0003DMG400012618	SEG:seg
UniParc:UPI0002948828	UniProt:M1AY69	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012618]

Coordinates

chr2:+:47591315..47594768

Molecular Weight (calculated)

37195.6 Da

IEP (calculated)

6.200

GRAVY (calculated)

-0.822

Length

323 amino acids

Sequence
(BLAST)

001: MHMSDAGCRS VTPKNRKSKT RNKLKRRKPK FLSLSLELSE KPSDHMIVSP SNGSTHDHDQ LNLFPLHPEN LVDDKDSTST AQDENVALFF AAAENSATTL
101: NEVLVSSKDE IDSNISTSVP NYMTVSSSEA SLTFADTYRG QEGELVRTAL RNKEREHREE EKWVVYSDVV DFDQHSESTR KDEEVSSCPW NKHHQRRQQQ
201: LSLKLDYDEI LNAWSDKGPL YLQSESPQIV PDIHDDFLAY DMPFSLNGQL MSISSVVPEV IGNEEREVED EEMKAGRREA SVMRYKEKRQ NRLFSKTIRY
301: QVRKLNAEKR PRIKVITLLM FVT

Best Arabidopsis Sequence Match ( AT5G14370.1 )
(BLAST)

001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS

Arabidopsis Description

CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.