Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85600 | Canola | nucleus | 94.77 | 45.6 |
| CDX91067 | Canola | nucleus | 94.77 | 44.89 |
| Bra006252.1-P | Field mustard | nucleus | 83.01 | 42.19 |
| AT5G14370.1 | Thale cress | nucleus | 86.93 | 39.23 |
| HORVU2Hr1G056960.1 | Barley | peroxisome | 25.49 | 37.14 |
| GSMUA_Achr11P... | Banana | nucleus | 43.79 | 35.45 |
| VIT_14s0219g00220.t01 | Wine grape | nucleus, plastid | 52.94 | 26.13 |
| Bra008763.1-P | Field mustard | nucleus, plastid | 86.27 | 24.67 |
| Bra015548.1-P | Field mustard | nucleus | 32.68 | 24.63 |
| GSMUA_Achr10P... | Banana | nucleus | 43.79 | 23.26 |
| PGSC0003DMT400032849 | Potato | nucleus | 47.71 | 22.6 |
| Solyc02g093590.2.1 | Tomato | nucleus | 47.06 | 22.5 |
| KRH07084 | Soybean | plastid | 51.63 | 22.32 |
| KRG94369 | Soybean | plastid | 49.02 | 21.19 |
| Zm00001d049651_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 33.33 | 18.82 |
| TraesCS7D01G311500.1 | Wheat | nucleus | 34.64 | 18.28 |
| KXG24303 | Sorghum | mitochondrion, nucleus | 34.64 | 17.97 |
| TraesCS7B01G215100.1 | Wheat | nucleus | 33.99 | 17.63 |
| TraesCS7A01G314300.1 | Wheat | nucleus | 33.99 | 17.45 |
| Zm00001d035134_P001 | Maize | plastid | 29.41 | 16.85 |
| Os08t0119700-00 | Rice | plastid | 34.64 | 14.97 |
| Bra020461.1-P | Field mustard | nucleus | 32.68 | 12.69 |
| Bra013939.1-P | Field mustard | plastid | 31.37 | 12.57 |
| Bra019134.1-P | Field mustard | plastid | 31.37 | 12.53 |
| Bra032273.1-P | Field mustard | nucleus | 25.49 | 12.42 |
| Bra002752.1-P | Field mustard | nucleus, plastid | 30.07 | 11.7 |
| HORVU7Hr1G074920.1 | Barley | extracellular, mitochondrion | 21.57 | 11.07 |
| Bra012475.1-P | Field mustard | nucleus | 29.41 | 11.03 |
| Bra033925.1-P | Field mustard | nucleus | 28.76 | 10.97 |
| HORVU7Hr1G074960.1 | Barley | nucleus | 15.69 | 10.62 |
| Bra024750.1-P | Field mustard | nucleus | 28.1 | 10.39 |
| Bra004035.1-P | Field mustard | nucleus | 27.45 | 8.86 |
| Bra010994.1-P | Field mustard | nucleus | 19.61 | 7.37 |
| Bra023462.1-P | Field mustard | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra023461.1 | EnsemblPlants:Bra023461.1-P | EnsemblPlantsGene:Bra023461 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:CCT_domain | InterPro:IPR010402 |
| PANTHER:PTHR31874 | PANTHER:PTHR31874:SF18 | PFAM:PF06203 | PFscan:PS51017 | UniParc:UPI0002543564 | UniProt:M4E3V8 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT5G14370 (E=6e-072) | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to 1506 proteins in 139 species: Archae - 0; Bacteria - 8; Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).
Coordinates
chrA02:-:3453187..3454201
Molecular Weight (calculated)
17413.5 Da
IEP (calculated)
8.221
GRAVY (calculated)
-0.834
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKGASKEET TAERWVSYSE VVDEVMSRSG TPRCCGGDGN DGRTSLALKL DYEEIMEAWP DKGTLYVDGE PPQTVPDLHA STDVVTGGGE AGSLWTVPEM
101: ETTETLWRGH REASLLRYKE KRQSRLFSKR IRYQVRKLNA EKRPRVKHFT HLV
101: ETTETLWRGH REASLLRYKE KRQSRLFSKR IRYQVRKLNA EKRPRVKHFT HLV
001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
Arabidopsis Description
CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.