Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015548.1-P | Field mustard | nucleus | 98.02 | 97.54 |
| CDY10244 | Canola | nucleus | 94.06 | 94.06 |
| CDY15597 | Canola | nucleus | 77.23 | 79.59 |
| CDY66177 | Canola | nucleus | 76.24 | 78.17 |
| AT1G07050.2 | Thale cress | nucleus | 70.3 | 71.72 |
| VIT_06s0004g07210.t01 | Wine grape | nucleus | 33.66 | 67.33 |
| CDX70561 | Canola | nucleus | 27.23 | 36.42 |
| CDX77359 | Canola | nucleus | 23.27 | 29.38 |
| CDY42769 | Canola | nucleus | 24.75 | 21.46 |
| CDY07383 | Canola | cytosol | 23.76 | 20.87 |
| CDY66242 | Canola | nucleus | 31.19 | 20.06 |
| CDY04230 | Canola | nucleus | 22.77 | 20.0 |
| CDX85600 | Canola | nucleus | 31.19 | 19.81 |
| CDX78575 | Canola | nucleus | 28.71 | 19.27 |
| CDX91067 | Canola | nucleus | 30.69 | 19.2 |
| CDX69586 | Canola | nucleus, plastid | 31.19 | 19.09 |
| CDY09849 | Canola | nucleus | 31.19 | 19.03 |
| CDY03851 | Canola | nucleus | 27.23 | 14.78 |
| CDY42238 | Canola | nucleus | 27.72 | 14.51 |
| CDY38274 | Canola | nucleus, plastid | 28.22 | 14.36 |
| CDY47926 | Canola | nucleus | 27.72 | 14.29 |
| CDY53119 | Canola | nucleus | 26.24 | 14.1 |
| CDY67920 | Canola | nucleus | 24.26 | 14.08 |
| CDY65591 | Canola | nucleus | 24.26 | 14.08 |
| CDY52734 | Canola | nucleus, plastid | 27.72 | 14.07 |
| CDY51133 | Canola | nucleus | 26.24 | 14.06 |
| CDY44890 | Canola | nucleus | 27.72 | 13.97 |
| CDX81527 | Canola | nucleus | 27.23 | 13.72 |
| CDX89377 | Canola | plastid | 25.25 | 13.35 |
| CDX92740 | Canola | plastid | 25.74 | 13.1 |
| CDX94392 | Canola | plastid | 23.76 | 12.5 |
| CDY24402 | Canola | nucleus | 22.77 | 12.47 |
| CDY36106 | Canola | nucleus | 17.33 | 9.11 |
| CDY07382 | Canola | nucleus | 0.5 | 2.27 |
| CDY04231 | Canola | mitochondrion | 0.5 | 2.27 |
Protein Annotations
| EnsemblPlants:CDY06672 | EnsemblPlantsGene:GSBRNA2T00122838001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF18 | PFAM:PF06203 | PFscan:PS51017 | ProteinID:CDY06672 |
| ProteinID:CDY06672.1 | SEG:seg | UniParc:UPI0004EE34AA | MapMan:35.1 | : | : |
Description
BnaA10g04510D
Coordinates
chrLK031972:-:197640..198983
Molecular Weight (calculated)
24176.7 Da
IEP (calculated)
4.818
GRAVY (calculated)
-1.232
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTQRLPKKE EQEEEVADHQ PFSIFESTNA FSQEQHYHSV DGFDRIFDMN IDSLSCSHEL NWDFWKEEDD EEDVKEEEKS LSTDHEGSTS GFWDNTSTDY
101: EDRELGLKLN LNHQEVIDAW SDRRQQPLWT DTSMLMAPAS ALYRGEVPVM DEERNTRREA SVLRYKEKRQ SRLFSKKIRY QVRKLNADKR PRFKGRFVRR
201: ET
101: EDRELGLKLN LNHQEVIDAW SDRRQQPLWT DTSMLMAPAS ALYRGEVPVM DEERNTRREA SVLRYKEKRQ SRLFSKKIRY QVRKLNADKR PRFKGRFVRR
201: ET
001: MDTQRLPKKE EEEEEDHLLS STFESINGHS RDQHNHSIDD FESIFDITID NLSCSNELTW DFWEEDEDED VGEEEKRSST DQEGSSFGFW ENKPTDYEDK
101: DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKGRF VKRET
101: DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKGRF VKRET
Arabidopsis Description
CCT motif family protein [Source:TAIR;Acc:AT1G07050]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.