CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06672	Canola	nucleus	94.06	94.06
CDY15597	Canola	nucleus	76.73	79.08
CDY66177	Canola	nucleus	75.74	77.67
AT1G07050.2	Thale cress	nucleus	70.3	71.72
VIT_06s0004g07210.t01	Wine grape	nucleus	33.66	67.33
CDX70561	Canola	nucleus	26.24	35.1
CDX77359	Canola	nucleus	22.77	28.75
CDY07383	Canola	cytosol	23.76	20.87
CDY42769	Canola	nucleus	23.76	20.6
CDY66242	Canola	nucleus	31.19	20.06
CDY04230	Canola	nucleus	22.28	19.57
CDX69586	Canola	nucleus, plastid	30.69	18.79
CDY09849	Canola	nucleus	30.69	18.73
CDX85600	Canola	nucleus	29.21	18.55
CDX78575	Canola	nucleus	27.23	18.27
CDX91067	Canola	nucleus	28.71	17.96
CDY03851	Canola	nucleus	26.24	14.25
CDY38274	Canola	nucleus, plastid	27.72	14.11
CDY52734	Canola	nucleus, plastid	27.72	14.07
CDY42238	Canola	nucleus	26.73	13.99
CDY44890	Canola	nucleus	27.72	13.97
CDY67920	Canola	nucleus	23.76	13.79
CDY65591	Canola	nucleus	23.76	13.79
CDY47926	Canola	nucleus	26.73	13.78
CDX81527	Canola	nucleus	27.23	13.72
CDY53119	Canola	nucleus	25.25	13.56
CDY51133	Canola	nucleus	25.25	13.53
CDX89377	Canola	plastid	24.75	13.09
CDX92740	Canola	plastid	24.75	12.59
CDY24402	Canola	nucleus	22.77	12.47
CDX94392	Canola	plastid	23.27	12.24
CDY36106	Canola	nucleus	17.82	9.38
CDY07382	Canola	nucleus	0.5	2.27
CDY04231	Canola	mitochondrion	0.5	2.27

Protein Annotations

MapMan:35.2	UniProt:A0A078FB35	InterPro:CCT_domain	EnsemblPlants:CDY10244	ProteinID:CDY10244	ProteinID:CDY10244.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00032068001	InterPro:IPR010402	PFAM:PF06203	PFscan:PS51017	PANTHER:PTHR31874
PANTHER:PTHR31874:SF18	UniParc:UPI0004EDD0CD	SEG:seg	:	:	:

Description

BnaC05g04870DBnaC05g04870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB35]

Coordinates

chrLK032001:-:729375..730718

Molecular Weight (calculated)

24284.0 Da

IEP (calculated)

5.009

GRAVY (calculated)

-1.215

Length

202 amino acids

Sequence
(BLAST)

001: MDTQRLPKKE EQEEEVADHK PFSIFDSINA FSREQHYHSV DGFDRIFDMN IDSLSCSHEL NWNFWKEEDE EEDVKEEEKS LSTDHEGSSS GFWDNMSTDY
101: EDRELGLKLN LNHQEVIDAW SDRRQQSLWT DTSMLMAPAN ALYRGEVPVM DEERNTRREA SVLRYKEKRQ SRLFSKKIRY EVRKFNADKR PRFKGRFVRR
201: ET

Best Arabidopsis Sequence Match ( AT1G07050.1 )
(BLAST)

001: MDTQRLPKKE EEEEEDHLLS STFESINGHS RDQHNHSIDD FESIFDITID NLSCSNELTW DFWEEDEDED VGEEEKRSST DQEGSSFGFW ENKPTDYEDK
101: DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKGRF VKRET

Arabidopsis Description

CCT motif family protein [Source:TAIR;Acc:AT1G07050]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.