Factsheet for HORVU6Hr1G073170.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G013820.4
HORVU5Hr1G059690.7
HORVU6Hr1G076380.4
HORVU7Hr1G039360.7
HORVU7Hr1G039390.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	HORVU2Hr1G013820.4	AT1G60010.1	21798944
AT1G68520.1	HORVU5Hr1G059690.7	AT1G60010.1	21798944
AT1G68520.1	HORVU6Hr1G076380.4	AT1G60010.1	21798944
AT1G68520.1	HORVU7Hr1G039360.7	AT1G60010.1	21798944
AT1G68520.1	HORVU7Hr1G039390.1	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G323400.1	Wheat	nucleus	79.92	92.99
TraesCS6D01G274100.1	Wheat	nucleus	80.72	92.63
TraesCS6A01G293200.1	Wheat	nucleus	77.91	91.08
Os02t0731700-02	Rice	nucleus	60.04	66.15
CDY04231	Canola	mitochondrion	5.42	61.36
Zm00001d017939_P001	Maize	nucleus	55.02	58.92
EES05581	Sorghum	nucleus, plastid	57.63	58.81
GSMUA_Achr4P30670_001	Banana	nucleus	36.14	49.05
KRH13468	Soybean	cytosol	9.64	48.48
GSMUA_Achr10P...	Banana	nucleus	30.72	43.59
VIT_01s0011g03520.t01	Wine grape	nucleus	36.75	42.36
CDY67920	Canola	nucleus	28.51	40.8
CDY65591	Canola	nucleus	28.51	40.8
CDY03851	Canola	nucleus	30.32	40.59
KRH35955	Soybean	nucleus	34.14	40.57
KRG90815	Soybean	nucleus	33.53	39.95
HORVU4Hr1G007420.1	Barley	nucleus, plastid	32.13	39.02
Solyc04g007210.2.1	Tomato	nucleus	33.13	38.55
AT1G25440.1	Thale cress	nucleus	31.93	38.13
CDX77359	Canola	nucleus	12.25	38.12
CDY53119	Canola	nucleus	28.71	38.03
CDY44890	Canola	nucleus	30.52	37.91
Bra033925.1-P	Field mustard	nucleus	30.52	37.91
Bra012475.1-P	Field mustard	nucleus	30.92	37.75
CDY24402	Canola	nucleus	27.91	37.67
CDY51133	Canola	nucleus	28.51	37.67
Solyc05g009310.2.1	Tomato	nucleus	32.93	37.53
Bra024750.1-P	Field mustard	nucleus	31.12	37.44
AT1G68520.1	Thale cress	nucleus	30.52	37.44
CDX81527	Canola	nucleus	30.12	37.41
PGSC0003DMT400037755	Potato	nucleus	32.73	36.47
CDY04230	Canola	nucleus	16.67	36.09
CDY36106	Canola	nucleus	24.3	31.51
HORVU2Hr1G056960.1	Barley	peroxisome	6.63	31.43
Bra004035.1-P	Field mustard	nucleus	29.72	31.22
Bra010994.1-P	Field mustard	nucleus	24.7	30.22
PGSC0003DMT400020030	Potato	nucleus	30.32	26.82
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	10.44	17.63
HORVU6Hr1G021460.2	Barley	plastid	16.67	16.94
HORVU7Hr1G074920.1	Barley	extracellular, mitochondrion	7.23	12.08
HORVU7Hr1G074960.1	Barley	nucleus	5.42	11.95

Protein Annotations

MapMan:15.5.1.2	EMBL:AK356535	InterPro:CCT_domain	UniProt:F2CY31	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
EnsemblPlantsGene:HORVU6Hr1G073170	EnsemblPlants:HORVU6Hr1G073170.1	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF22	SMART:SM00336	UniParc:UPI0002004CCA
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CY31]

Coordinates

chrchr6H:+:507544787..507546947

Molecular Weight (calculated)

54290.3 Da

IEP (calculated)

8.106

GRAVY (calculated)

-0.464

Length

498 amino acids

Sequence
(BLAST)

001: MPAAQIELPS KSSDTFLSFL LSRNLLRVDV GGIAVIIIII IRYQKKPYCL RWRWSGLHVL VEAAEMGGSD HNHKAAGGAV GGKAARACDG CMRRRARWYC
101: AADDAFLCQG CETSVHSANP LARRHERLRL RVTSPLPAEG VATAVKGSPA TTSKCLDVAP AWPKRKARTR RPTVKSVGQL LSRRLVVPEV GAGESSTSDE
201: RRAPEEEQLL YRVPVFDPAL GEFCSPPPID DAVAATSRHG EDVEGAVEDA KELMDTPSPV QELPDCFASF GPTDADLREF AADMEALLGQ GLDDGNELED
301: SFYMEALGLI SPPAEHGGRV KVEADGGLVS RSNGVLAAGH DLKREFSGSP PTLVDDDDSF EHKTSSASNG DAVDGAQFLK RSLDLRLNYE AVIASWASSP
401: WTDGRRPPGQ QLDDLLLNDH AGMWTAGGGG RQGEAAWPAR PRTDGWREAR VSRYREKRRT RLFAKKIRYE VRKLNAEKRP RMKGRFVKRT GAAPCAVT

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.