Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 97.56 | 97.32 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 97.32 | 97.32 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 94.63 | 94.63 |
| Os03t0711100-01 | Rice | plastid | 74.88 | 72.92 |
| EER93585 | Sorghum | plastid | 70.73 | 69.05 |
| Zm00001d013443_P001 | Maize | plastid | 67.8 | 67.31 |
| Zm00001d033719_P001 | Maize | plastid | 69.02 | 60.08 |
| CDY04231 | Canola | mitochondrion | 5.85 | 54.55 |
| KRH13468 | Soybean | cytosol | 10.73 | 44.44 |
| CDY65591 | Canola | nucleus | 35.37 | 41.67 |
| CDY67920 | Canola | nucleus | 35.12 | 41.38 |
| CDX77359 | Canola | nucleus | 15.85 | 40.62 |
| CDY03851 | Canola | nucleus | 35.85 | 39.52 |
| KRH35955 | Soybean | nucleus | 40.0 | 39.14 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 41.22 | 39.12 |
| CDY53119 | Canola | nucleus | 35.61 | 38.83 |
| KRG90815 | Soybean | nucleus | 39.02 | 38.28 |
| CDY51133 | Canola | nucleus | 35.12 | 38.2 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 40.0 | 37.96 |
| CDY04230 | Canola | nucleus | 20.98 | 37.39 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 38.29 | 36.85 |
| Bra024750.1-P | Field mustard | nucleus | 37.07 | 36.72 |
| CDY24402 | Canola | nucleus | 32.68 | 36.31 |
| Solyc05g009310.2.1 | Tomato | nucleus | 38.54 | 36.16 |
| PGSC0003DMT400037755 | Potato | nucleus | 39.27 | 36.02 |
| Solyc04g007210.2.1 | Tomato | nucleus | 37.56 | 35.98 |
| AT1G25440.1 | Thale cress | nucleus | 36.59 | 35.97 |
| Bra012475.1-P | Field mustard | nucleus | 35.61 | 35.78 |
| AT1G68520.1 | Thale cress | nucleus | 35.37 | 35.71 |
| CDY44890 | Canola | nucleus | 34.88 | 35.66 |
| CDX81527 | Canola | nucleus | 34.88 | 35.66 |
| Bra033925.1-P | Field mustard | nucleus | 34.39 | 35.16 |
| Bra004035.1-P | Field mustard | nucleus | 35.12 | 30.38 |
| CDY36106 | Canola | nucleus | 28.05 | 29.95 |
| Bra010994.1-P | Field mustard | nucleus | 29.02 | 29.24 |
| PGSC0003DMT400020030 | Potato | nucleus | 34.63 | 25.22 |
| TraesCS7A01G314300.1 | Wheat | nucleus | 14.88 | 20.47 |
| TraesCS6A01G118000.1 | Wheat | plastid | 20.73 | 17.28 |
| TraesCS7A01G422200.1 | Wheat | nucleus, plastid | 18.05 | 16.16 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G268500.1 | EnsemblPlantsGene:TraesCS4A01G268500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF20 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : |
Description
No Description!
Coordinates
chr4A:-:580734487..580735937
Molecular Weight (calculated)
44831.5 Da
IEP (calculated)
6.203
GRAVY (calculated)
-0.583
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAGAAIGA RAARACDGCM RRRARWHCAA DDAYLCQACD ASVHSANPLA RRHHRVRLPS SSSPAATSSL QHADPDEPAW LHGLKRRPRT PRSKPGMVGK
101: HGAPATAKAA AASAVPDLEA EDSGSGIVGD NDEGHGVEVD DEDLLYRVPV FDPMLAELYN PVPVDEFREP LEQKPSVCCF SSLANQPSSE YASGVAEAAD
201: GFSGFDVVPD MELASFAADM ESLLMGGVEE GFDDLRFLDE EKPQLNLDFD MADFDDQSTA APAPEQELED RKRKRSDSGM ILKLDYERVI DSWAHDGGSP
301: WFYGERPHID PSDDSWLDLP AGSRGFGLGA AVTAVTGGER EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRTALPPLPP RPPMVLAGHG
401: HGGAHGRFRF
101: HGAPATAKAA AASAVPDLEA EDSGSGIVGD NDEGHGVEVD DEDLLYRVPV FDPMLAELYN PVPVDEFREP LEQKPSVCCF SSLANQPSSE YASGVAEAAD
201: GFSGFDVVPD MELASFAADM ESLLMGGVEE GFDDLRFLDE EKPQLNLDFD MADFDDQSTA APAPEQELED RKRKRSDSGM ILKLDYERVI DSWAHDGGSP
301: WFYGERPHID PSDDSWLDLP AGSRGFGLGA AVTAVTGGER EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRTALPPLPP RPPMVLAGHG
401: HGGAHGRFRF
001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
Arabidopsis Description
COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.