Factsheet for Zm00001d053880_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015268_P001	Maize	plastid	80.34	80.51
Os02t0148000-01	Rice	plastid	78.22	78.56
Zm00001d014664_P001	Maize	plastid	45.03	48.97
GSMUA_Achr6P01780_001	Banana	nucleus	41.44	47.8
GSMUA_Achr7P19660_001	Banana	mitochondrion	41.86	44.7
GSMUA_Achr10P...	Banana	nucleus	28.96	42.55
KRH02778	Soybean	nucleus, plastid	34.67	41.21
KRH19100	Soybean	nucleus	33.83	40.1
VIT_11s0103g00760.t01	Wine grape	plastid	34.04	38.61
PGSC0003DMT400059170	Potato	plastid	34.46	37.73
Solyc07g008540.2.1	Tomato	nucleus, plastid	34.04	37.27
Bra019134.1-P	Field mustard	plastid	28.96	35.77
CDY42769	Canola	nucleus	17.55	35.62
Bra002752.1-P	Field mustard	nucleus, plastid	29.39	35.37
Bra020461.1-P	Field mustard	nucleus	29.39	35.28
CDY38274	Canola	nucleus, plastid	29.6	35.26
CDX89377	Canola	plastid	28.33	35.08
CDY42238	Canola	nucleus	28.54	34.97
CDY47926	Canola	nucleus	28.96	34.95
CDY52734	Canola	nucleus, plastid	29.39	34.92
Bra013939.1-P	Field mustard	plastid	28.12	34.82
CDX94392	Canola	plastid	27.7	34.11
AT4G25990.2	Thale cress	nucleus	29.39	33.99
CDX92740	Canola	plastid	28.33	33.75
AT5G57180.2	Thale cress	nucleus, plastid	30.23	32.87
KRH37334	Soybean	nucleus, plastid	23.04	29.14
KRH12328	Soybean	plastid	23.26	27.85
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	13.32	23.25
Zm00001d035134_P001	Maize	plastid	11.42	20.22
Zm00001d013443_P001	Maize	plastid	16.91	19.37
Zm00001d037327_P001	Maize	mitochondrion, nucleus	17.55	18.36
Zm00001d045661_P001	Maize	nucleus	17.12	17.76
Zm00001d017939_P001	Maize	nucleus	17.34	17.63
Zm00001d033719_P001	Maize	plastid	16.91	16.99

Protein Annotations

EnsemblPlants:Zm00001d053880_P001	EnsemblPlants:Zm00001d053880_T001	EnsemblPlantsGene:Zm00001d053880	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402
PANTHER:PTHR31874	PANTHER:PTHR31874:SF7	PFAM:PF06203	PFscan:PS51017	ProteinID:AQK60614.1	SEG:seg
UniParc:UPI0008437C52	UniProt:A0A1D6QT42	MapMan:35.1	:	:	:

Description

Protein CHLOROPLAST IMPORT APPARATUS 2

Coordinates

chr4:-:242868767..242871205

Molecular Weight (calculated)

49312.0 Da

IEP (calculated)

8.589

GRAVY (calculated)

-0.418

Length

473 amino acids

Sequence
(BLAST)

001: MSSSCIPTGL RLDLDMVKAA ASPVGAHSSP LRPAHYSSPS STLSSEASNA SSSSATSVSL KRARAPRKRP NQAYNEAAAL LASIHPSVFP VNKSPKTAPP
101: RPPQLSVLAA ALDASPDLLP PLPVLADSAF LLRDQDTPSP KPRSPSGAKN CPSPAPVSSA FRDFRDPPSS ASLDAVGADE LGEIDFDDDG FNADSILDVG
201: DAAAGGLDGI MGSLTVDVES GTAARSDDSI LSSSGIHPYL RRLMVVGLAG RFELGLGSQH GARPSLNRAL KRRDDDGAWW MWPAVPVKDL TIAPPAPPAP
301: PAPNAAVPQA AAAAAPEKKK SKKKKVVKAM AKGNEELLPN AKCKEEEADA SVDDAAANGD GDSDSAPTNA PKAGLGLKLD ADEVLKAWSD KGSMFAEGSG
401: PELPTSAAEV RAKLADIDLF PENGAGGGGV REASVLRYKE KRRTRLFSKK IRYQVRKVNA DCRPRMKAST RTD

Best Arabidopsis Sequence Match ( AT5G57180.1 )
(BLAST)

001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKV SNPS

Arabidopsis Description

CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.