Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g006750.2.1 | Tomato | nucleus | 23.53 | 42.31 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 37.97 | 41.04 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 28.34 | 38.69 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 36.36 | 38.42 |
| CDY18333 | Canola | nucleus | 36.9 | 38.33 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 41.18 | 37.02 |
| CDY42453 | Canola | cytosol | 35.29 | 36.46 |
| Bra002986.1-P | Field mustard | cytosol | 35.29 | 36.26 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 29.41 | 36.18 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 28.88 | 35.06 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 36.36 | 33.66 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 36.36 | 33.01 |
| GSMUA_Achr9P13880_001 | Banana | nucleus | 25.67 | 32.65 |
| KRH22488 | Soybean | nucleus | 38.5 | 32.58 |
| Solyc02g079430.2.1 | Tomato | nucleus | 31.55 | 31.89 |
| KRH26865 | Soybean | nucleus | 37.43 | 31.67 |
| PGSC0003DMT400057529 | Potato | nucleus | 32.09 | 31.58 |
| AT5G54470.1 | Thale cress | cytosol | 35.83 | 31.16 |
| VIT_00s0347g00030.t01 | Wine grape | nucleus | 35.29 | 31.13 |
| VIT_00s0203g00210.t01 | Wine grape | nucleus | 35.29 | 30.7 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 32.62 | 30.35 |
| Bra019058.1-P | Field mustard | cytosol | 32.62 | 29.76 |
| GSMUA_Achr11P... | Banana | nucleus | 34.76 | 29.28 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 35.83 | 29.13 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 37.43 | 29.05 |
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 33.16 | 27.8 |
| PGSC0003DMT400067337 | Potato | nucleus | 37.97 | 27.63 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 37.43 | 27.24 |
| KRH55436 | Soybean | nucleus | 30.48 | 26.39 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 41.18 | 25.75 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 39.57 | 24.83 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 47.59 | 24.79 |
| Zm00001d049464_P001 | Maize | nucleus | 34.22 | 24.52 |
| Zm00001d024213_P001 | Maize | nucleus | 33.69 | 24.23 |
| PGSC0003DMT400064406 | Potato | nucleus | 29.95 | 24.14 |
| EES14650 | Sorghum | nucleus | 34.76 | 23.99 |
| Os08t0178800-01 | Rice | nucleus | 34.22 | 22.78 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 21.39 | 16.33 |
| GSMUA_Achr6P03790_001 | Banana | nucleus | 19.25 | 16.07 |
| GSMUA_Achr1P10450_001 | Banana | cytosol | 20.32 | 15.9 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus, plastid | 20.32 | 12.88 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P07440_001 | EnsemblPlants:GSMUA_Achr8T07440_001 | EnsemblPlantsGene:GSMUA_Achr8G07440_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | PFAM:PF00643 | SEG:seg | SMART:SM00336 | UniParc:UPI0002956A23 | UniProt:M0TNE7 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G07440_001]
Coordinates
chr8:+:4996507..4997730
Molecular Weight (calculated)
20314.6 Da
IEP (calculated)
7.858
GRAVY (calculated)
-0.764
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVKQCELCD RPARMHCESD QASLCWECDA KVHGANFLVA RHSRCLLCQS CQSPTPWRAE GARPGYAAST CERCAVVPWS MTPPPVSSSS SSEEEQEAGR
101: RERGGGFLKR TRVNVNLPLS QEDVACSSSQ PSYMTSDDAT SRDRKRPNPL RADTSTSALG DVRFHGNQGG LTSSHPGIAE QSKKQQG
101: RERGGGFLKR TRVNVNLPLS QEDVACSSSQ PSYMTSDDAT SRDRKRPNPL RADTSTSALG DVRFHGNQGG LTSSHPGIAE QSKKQQG
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Arabidopsis Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.