Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42453 | Canola | cytosol | 96.7 | 97.24 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 56.04 | 50.75 |
| AT5G54470.1 | Thale cress | cytosol | 53.3 | 45.12 |
| Bra019058.1-P | Field mustard | cytosol | 50.0 | 44.39 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 46.15 | 40.38 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 49.45 | 39.13 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 50.55 | 38.17 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 36.26 | 35.29 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 44.51 | 27.18 |
| Bra023857.1-P | Field mustard | cytosol | 18.13 | 26.83 |
| Bra039558.1-P | Field mustard | cytosol | 14.29 | 26.8 |
| GSMUA_Achr11P... | Banana | nucleus | 31.87 | 26.13 |
| EES14650 | Sorghum | nucleus | 37.91 | 25.46 |
| Zm00001d049464_P001 | Maize | nucleus | 36.26 | 25.29 |
| Zm00001d024213_P001 | Maize | nucleus | 34.07 | 23.85 |
| Os08t0178800-01 | Rice | nucleus | 35.16 | 22.78 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 39.56 | 20.06 |
| Bra001815.1-P | Field mustard | cytosol | 20.33 | 16.09 |
| Bra031255.1-P | Field mustard | cytosol | 18.68 | 15.38 |
Protein Annotations
| EnsemblPlants:Bra002986.1 | EnsemblPlants:Bra002986.1-P | EnsemblPlantsGene:Bra002986 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | PFAM:PF00643 | SEG:seg | SMART:SM00336 | UniParc:UPI0002543EC3 | UniProt:M4CFK4 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT5G54470 (E=3e-038) | zinc finger (B-box type) family protein
Coordinates
chrA10:-:6275991..6276539
Molecular Weight (calculated)
19513.7 Da
IEP (calculated)
4.773
GRAVY (calculated)
-0.471
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKNCELCD GVARMFCESD QASLCWNCDG KVHGANFLVA KHTRCLLCSV CQSPTPWKAS GLRFGPTVSV CESCLARKNK TLNLKKEISS NDNHNDDDDD
101: CEEGDEEEAE NQVVPGDVAP VMSSSSSVSS GEESVSGDGG LVVKRTRGGL DLDCFDGCDT SSTSSSSTLV LITAKKRRYL SR
101: CEEGDEEEAE NQVVPGDVAP VMSSSSSVSS GEESVSGDGG LVVKRTRGGL DLDCFDGCDT SSTSSSSTLV LITAKKRRYL SR
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Arabidopsis Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.