Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002986.1-P | Field mustard | cytosol | 97.24 | 96.7 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 45.3 | 59.85 |
| CDY18333 | Canola | nucleus | 54.14 | 54.44 |
| AT5G54470.1 | Thale cress | cytosol | 54.7 | 46.05 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 45.86 | 39.9 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 36.46 | 35.29 |
| CDY64254 | Canola | cytosol | 17.13 | 27.68 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 45.3 | 27.52 |
| CDY55658 | Canola | cytosol | 18.23 | 26.83 |
| CDX71395 | Canola | cytosol | 18.23 | 26.83 |
| CDY57233 | Canola | cytosol | 14.36 | 26.8 |
| CDY22930 | Canola | cytosol | 14.36 | 26.8 |
| CDY33149 | Canola | cytosol, nucleus, plastid | 18.23 | 26.4 |
| GSMUA_Achr11P... | Banana | nucleus | 32.04 | 26.13 |
| EES14650 | Sorghum | nucleus | 38.12 | 25.46 |
| Zm00001d049464_P001 | Maize | nucleus | 36.46 | 25.29 |
| Zm00001d024213_P001 | Maize | nucleus | 34.81 | 24.23 |
| Os08t0178800-01 | Rice | nucleus | 34.81 | 22.42 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 39.78 | 20.06 |
| CDY32408 | Canola | cytosol | 20.44 | 16.82 |
| CDX82214 | Canola | cytosol | 20.44 | 16.09 |
| CDY50075 | Canola | nucleus | 18.78 | 15.25 |
| CDY19582 | Canola | cytosol | 18.23 | 14.93 |
Protein Annotations
| EnsemblPlants:CDY42453 | EnsemblPlantsGene:GSBRNA2T00074876001 | GO:A0A078I073 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | PFAM:PF00643 | ProteinID:CDY42453 | ProteinID:CDY42453.1 | SEG:seg | SMART:SM00336 |
| UniParc:UPI0004EE07DA | UniProt:A0A078I073 | MapMan:35.2 | : | : | : |
Description
BnaA10g08290DBnaA10g08290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I073]
Coordinates
chrLK032525:-:55890..56519
Molecular Weight (calculated)
19327.6 Da
IEP (calculated)
5.070
GRAVY (calculated)
-0.422
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKNCELCD GVARMFCESD QASLCWNCDG KVHGANFLVA KHTRCLLCSV CQSPTPWKAS GLRFGPTVSV CESCLARKNK TLSLKKEISS NDNHNDDDDC
101: EEGEEEEAEN QVVPGGVAPV MSSSSSVSSG EESVSGDGGL VVKRTRGGLD LDCFDGCDTS STSSSSTLVL ITAKKRRYLS R
101: EEGEEEEAEN QVVPGGVAPV MSSSSSVSSG EESVSGDGGL VVKRTRGGLD LDCFDGCDTS STSSSSTLVL ITAKKRRYLS R
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Arabidopsis Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.