Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64254 | Canola | cytosol | 76.8 | 85.71 |
| CDX71395 | Canola | cytosol | 82.4 | 83.74 |
| CDY55658 | Canola | cytosol | 82.4 | 83.74 |
| AT3G21890.1 | Thale cress | cytosol | 62.4 | 64.46 |
| CDY22930 | Canola | cytosol | 41.6 | 53.61 |
| CDY57233 | Canola | cytosol | 41.6 | 53.61 |
| KRH26836 | Soybean | cytosol, nucleus, plastid | 34.4 | 34.68 |
| KRH22520 | Soybean | cytosol, nucleus, plastid | 34.4 | 34.68 |
| VIT_12s0059g02510.t01 | Wine grape | nucleus | 34.4 | 33.86 |
| Solyc07g052620.1.1 | Tomato | nucleus | 32.8 | 31.54 |
| PGSC0003DMT400067296 | Potato | nucleus | 29.6 | 28.46 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 23.2 | 21.17 |
| CDY42453 | Canola | cytosol | 26.4 | 18.23 |
| CDY18333 | Canola | nucleus | 24.8 | 17.22 |
| CDY19582 | Canola | cytosol | 24.8 | 14.03 |
| CDY50075 | Canola | nucleus | 24.0 | 13.45 |
| CDY32408 | Canola | cytosol | 23.2 | 13.18 |
| CDX82214 | Canola | cytosol | 24.0 | 13.04 |
Protein Annotations
| EnsemblPlants:CDY33149 | EnsemblPlantsGene:GSBRNA2T00053846001 | GO:A0A078H6J9 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF22 | ProteinID:CDY33149 | ProteinID:CDY33149.1 | SMART:SM00336 | UniParc:UPI0004EEEE0D | UniProt:A0A078H6J9 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng07200DBnaCnng07200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6J9]
Coordinates
chrLK032307:-:308007..308384
Molecular Weight (calculated)
13899.5 Da
IEP (calculated)
7.591
GRAVY (calculated)
-0.209
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MCKGVNEEEN RSVHGGCRSL CTRPNVPVRC ELRGGDASVF CEADSAFLCR KCDRWVHGAN FLAWRHVRRV LCTACYKLTR RCLVGDNYHF VLPSATAGES
101: TVGDITTLNE QDSSNNEVPF CVSLI
101: TVGDITTLNE QDSSNNEVPF CVSLI
001: MCRGLNNEES RRSDGGGCRS LCTRPSVPVR CELCDGDASV FCEADSAFLC RKCDRWVHGA NFLAWRHVRR VLCTSCQKLT RRCLVGDHDF HVVLPSVTTV
101: GETTVENRSE QDNHEVPFVF L
101: GETTVENRSE QDNHEVPFVF L
Arabidopsis Description
MIP1BBBX31 [Source:UniProtKB/TrEMBL;Acc:A0A178VEW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.