Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g052620.1.1 | Tomato | nucleus | 73.08 | 73.08 |
| PGSC0003DMT400034275 | Potato | cytosol | 36.15 | 41.96 |
| Bra039558.1-P | Field mustard | cytosol | 29.23 | 39.18 |
| CDY22930 | Canola | cytosol | 29.23 | 39.18 |
| CDY57233 | Canola | cytosol | 28.46 | 38.14 |
| CDY64254 | Canola | cytosol | 28.46 | 33.04 |
| AT3G21890.1 | Thale cress | cytosol | 30.0 | 32.23 |
| AT4G15248.1 | Thale cress | cytosol | 28.46 | 31.62 |
| CDX71395 | Canola | cytosol | 29.23 | 30.89 |
| CDY55658 | Canola | cytosol | 29.23 | 30.89 |
| Bra023857.1-P | Field mustard | cytosol | 29.23 | 30.89 |
| CDY33149 | Canola | cytosol, nucleus, plastid | 28.46 | 29.6 |
| PGSC0003DMT400057529 | Potato | nucleus | 24.62 | 16.84 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 22.31 | 14.08 |
| PGSC0003DMT400067337 | Potato | nucleus | 24.62 | 12.45 |
| PGSC0003DMT400064406 | Potato | nucleus | 21.54 | 12.07 |
| PGSC0003DMT400068177 | Potato | nucleus | 23.85 | 11.83 |
Protein Annotations
| MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | InterPro:IPR000315 | EMBL:KX576539 | UniProt:M1CH17 | PFAM:PF00643 | EnsemblPlantsGene:PGSC0003DMG400026169 |
| PGSC:PGSC0003DMG400026169 | EnsemblPlants:PGSC0003DMT400067296 | PFscan:PS50119 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 | SMART:SM00336 |
| UniParc:UPI000295E93B | InterPro:Znf_B-box | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026169]
Coordinates
chr7:-:47281684..47282147
Molecular Weight (calculated)
14684.6 Da
IEP (calculated)
7.871
GRAVY (calculated)
-0.288
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSGRREGEE ETTSISYCKG PLKEGESIIR STISCALCSS EASVYCEADN AFLCRKCDRS VHGANFLAQR HIRCLLCSVC RKTTWRFLIG TSSELILPTI
101: AGLEQRNRRR SADSETMDYR TTPQELFLFI
101: AGLEQRNRRR SADSETMDYR TTPQELFLFI
001: MCRGFEKEEE RRSDNGGCQR LCTESHKAPV SCELCGENAT VYCEADAAFL CRKCDRWVHS ANFLARRHLR RVICTTCRKL TRRCLVGDNF NVVLPEIRMI
101: ARIEEHSSDH KIPFVFL
101: ARIEEHSSDH KIPFVFL
Arabidopsis Description
MIP1AB-box domain protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3I2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.