Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 72.99 | 49.75 |
| CDY18333 | Canola | nucleus | 62.77 | 47.78 |
| CDY42453 | Canola | cytosol | 59.85 | 45.3 |
| AT5G54470.1 | Thale cress | cytosol | 66.42 | 42.33 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 48.18 | 31.73 |
| CDY64254 | Canola | cytosol | 24.82 | 30.36 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 38.69 | 28.34 |
| CDY55658 | Canola | cytosol | 24.09 | 26.83 |
| CDX71395 | Canola | cytosol | 24.09 | 26.83 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 56.2 | 25.84 |
| CDY22930 | Canola | cytosol | 17.52 | 24.74 |
| CDY57233 | Canola | cytosol | 17.52 | 24.74 |
| Zm00001d049464_P001 | Maize | nucleus | 45.99 | 24.14 |
| Zm00001d024213_P001 | Maize | nucleus | 44.53 | 23.46 |
| CDY33149 | Canola | cytosol, nucleus, plastid | 21.17 | 23.2 |
| GSMUA_Achr11P... | Banana | nucleus | 37.23 | 22.97 |
| EES14650 | Sorghum | nucleus | 43.8 | 22.14 |
| Os08t0178800-01 | Rice | nucleus | 45.26 | 22.06 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 47.45 | 18.11 |
| CDY19582 | Canola | cytosol | 27.01 | 16.74 |
| CDY32408 | Canola | cytosol | 24.82 | 15.45 |
| CDY50075 | Canola | nucleus | 24.82 | 15.25 |
| CDX82214 | Canola | cytosol | 24.82 | 14.78 |
Protein Annotations
| MapMan:35.2 | GO:A0A078GVT7 | UniProt:A0A078GVT7 | EnsemblPlants:CDY28768 | ProteinID:CDY28768 | ProteinID:CDY28768.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00041413001 | InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | SMART:SM00336 | UniParc:UPI0004EDF95C | InterPro:Znf_B-box | SEG:seg | : |
Description
BnaA02g09600DBnaA02g09600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVT7]
Coordinates
chrLK032226:+:163946..164359
Molecular Weight (calculated)
14857.0 Da
IEP (calculated)
3.810
GRAVY (calculated)
-0.412
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKMKCELCE GVARMFCESD QASLCWDCDG NVHGANFLVA KHARCLLCSA CQSPTPWKAS GLRLCPTVSI CESCLARKNN YGAGSNSYGE DDGAESYDED
101: EEDEESDDEE EEEAENQVVP CDAAAAVQES PVLVVLC
101: EEDEESDDEE EEEAENQVVP CDAAAAVQES PVLVVLC
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Arabidopsis Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.