Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14650 | Sorghum | nucleus | 57.65 | 59.78 |
| Zm00001d024213_P001 | Maize | nucleus | 51.96 | 56.15 |
| Zm00001d049464_P001 | Maize | nucleus | 50.89 | 54.79 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 22.06 | 45.26 |
| Solyc10g006750.2.1 | Tomato | nucleus | 14.95 | 40.38 |
| AT5G54470.1 | Thale cress | cytosol | 29.18 | 38.14 |
| Bra019058.1-P | Field mustard | cytosol | 27.76 | 38.05 |
| Solyc02g079430.2.1 | Tomato | nucleus | 24.56 | 37.3 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 23.13 | 36.72 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 27.05 | 36.54 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 22.42 | 36.42 |
| CDY18333 | Canola | nucleus | 22.78 | 35.56 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 19.22 | 35.53 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 25.27 | 35.32 |
| Bra002986.1-P | Field mustard | cytosol | 22.78 | 35.16 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 19.22 | 35.06 |
| CDY42453 | Canola | cytosol | 22.42 | 34.81 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 28.47 | 34.78 |
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 27.4 | 34.53 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 29.54 | 34.44 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 22.78 | 34.22 |
| KRH26865 | Soybean | nucleus | 26.69 | 33.94 |
| PGSC0003DMT400057529 | Potato | nucleus | 22.42 | 33.16 |
| KRH22488 | Soybean | nucleus | 24.91 | 31.67 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 22.42 | 31.19 |
| VIT_00s0203g00210.t01 | Wine grape | nucleus | 23.84 | 31.16 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 22.78 | 31.07 |
| VIT_00s0347g00030.t01 | Wine grape | nucleus | 23.13 | 30.66 |
| KRH55436 | Soybean | nucleus | 22.78 | 29.63 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 30.96 | 29.1 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 28.83 | 27.18 |
| PGSC0003DMT400064406 | Potato | nucleus | 22.42 | 27.16 |
| GSMUA_Achr11P... | Banana | nucleus | 21.35 | 27.03 |
| PGSC0003DMT400067337 | Potato | nucleus | 23.49 | 25.68 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 22.78 | 24.9 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 31.67 | 24.79 |
Protein Annotations
| EnsemblPlants:Os08t0178800-01 | EnsemblPlantsGene:Os08g0178800 | EntrezGene:4344813 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | ProteinID:BAT04094.1 | RefSeq:XP_015648392.1 | SEG:seg | SMART:SM00336 | UniParc:UPI0001C7BC96 |
| UniProt:A0A0P0XCG2 | MapMan:35.2 | : | : | : | : |
Description
B-box-containing protein 24Hypothetical conserved gene. (Os08t0178800-01);Conserved hypothetical protein. (Os08t0178800-02)
Coordinates
chr8:-:4610545..4612918
Molecular Weight (calculated)
28242.8 Da
IEP (calculated)
4.462
GRAVY (calculated)
-0.718
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVAAEGKEK GVGGGGGGAG AGACELCGAA ARVYCGADEA TLCWGCDAQV HGANFLVARH ARALLCRGCA RPTPWRAAGP RLGPTASLCE RCVRRGGGGR
101: GGGGGGGAAG GGGRGGGGDE EMGGEGDEEE EDEDEEVVVE EEEDEDDEDE EGEGEGENQV VPWAEEAEAT PPPVASSTSS SSREAAANGA NAADRVKEDQ
201: PCSTSQPSLC RYASSAHHGG GGRSDEATSS RNGGGVGGRF LASRHRKRSP SDFRRSGLAQ SVSGVQGRNC SNAVVGRNDF S
101: GGGGGGGAAG GGGRGGGGDE EMGGEGDEEE EDEDEEVVVE EEEDEDDEDE EGEGEGENQV VPWAEEAEAT PPPVASSTSS SSREAAANGA NAADRVKEDQ
201: PCSTSQPSLC RYASSAHHGG GGRSDEATSS RNGGGVGGRF LASRHRKRSP SDFRRSGLAQ SVSGVQGRNC SNAVVGRNDF S
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.