Factsheet for VIT_19s0014g03960.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28768	Canola	cytosol, nucleus, plastid	25.84	56.2
CDY42453	Canola	cytosol	27.52	45.3
Bra002986.1-P	Field mustard	cytosol	27.18	44.51
Bra022722.1-P	Field mustard	cytosol, nucleus, plastid	29.19	43.28
CDY18333	Canola	nucleus	24.16	40.0
GSMUA_Achr8P07440_001	Banana	nucleus	24.83	39.57
AT5G54470.1	Thale cress	cytosol	28.19	39.07
Bra019058.1-P	Field mustard	cytosol	26.85	39.02
GSMUA_Achr3P22980_001	Banana	cytosol, nucleus, plastid	26.51	37.98
VIT_00s0347g00030.t01	Wine grape	nucleus	26.51	37.26
AT4G27310.1	Thale cress	cytosol, nucleus, plastid	27.85	37.22
VIT_00s0203g00210.t01	Wine grape	nucleus	26.85	37.21
VIT_12s0134g00400.t01	Wine grape	nucleus	37.25	37.12
Bra010408.1-P	Field mustard	cytosol, nucleus, plastid	28.52	35.27
Bra026361.1-P	Field mustard	cytosol, nucleus, plastid	27.18	35.22
Zm00001d049464_P001	Maize	nucleus	26.85	30.65
GSMUA_Achr11P...	Banana	nucleus	21.48	28.83
Os08t0178800-01	Rice	nucleus	27.18	28.83
Zm00001d024213_P001	Maize	nucleus	24.5	28.08
EES14650	Sorghum	nucleus	24.5	26.94
VIT_12s0059g02510.t01	Wine grape	nucleus	10.74	25.2
GSMUA_Achr5P26340_001	Banana	nucleus	28.52	23.68
VIT_09s0054g00530.t01	Wine grape	cytosol, nucleus, plastid	15.1	17.31

Protein Annotations

EntrezGene:100246896	wikigene:100246896	MapMan:35.2	ProteinID:CCB46404	ProteinID:CCB46404.1	UniProt:F6H2G0
EMBL:FN595229	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008270	InterPro:IPR000315	EntrezGene:LOC100246896	wikigene:LOC100246896	PFscan:PS50119	PANTHER:PTHR31717
PANTHER:PTHR31717:SF26	SMART:SM00336	TIGR:TC63011	TIGR:TC64810	TIGR:TC67223	UniParc:UPI0001985860
ArrayExpress:VIT_19s0014g03960	EnsemblPlantsGene:VIT_19s0014g03960	EnsemblPlants:VIT_19s0014g03960.t01	unigene:Vvi.7145	RefSeq:XP_002284274	RefSeq:XP_002284274.1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:-:4194453..4195989

Molecular Weight (calculated)

32741.0 Da

IEP (calculated)

4.219

GRAVY (calculated)

-0.913

Length

298 amino acids

Sequence
(BLAST)

001: MKEMKECELC SFPARMFCES DQARLCWDCD EKVHGANFLV ARHSRSLLCH ACQAPTPWKA SGTRLAPTVS VCEACVLRCD KDRHRSSGED RESEGGNTDD
101: EEDDDDDHDD DDENDGDEGD EDDDVEEEED GENQVVPLSS SAASLLLPPD ASSSSSEDGE ASSRFSARGR GGVSALKRTR QNADLDLDSD DDIGCCSWQH
201: NHKASRTAYD EEDTSLSSRR PCYERQPTEL NRSLKLEDQG ETESTSTAIV GSIKRFQKSI ISGDEAPAMI LGICKLSKDP RAVDLRPTAN PTIPSRTV

Best Arabidopsis Sequence Match ( AT4G27310.1 )
(BLAST)

001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV

Arabidopsis Description

BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.