Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0347g00030.t01 | Wine grape | nucleus | 96.74 | 98.11 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 36.74 | 51.3 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 35.35 | 50.0 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 30.7 | 35.29 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 32.56 | 33.65 |
| Zm00001d024213_P001 | Maize | nucleus | 35.35 | 29.23 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 39.53 | 28.43 |
| EES14650 | Sorghum | nucleus | 33.95 | 26.94 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 37.21 | 26.85 |
| GSMUA_Achr11P... | Banana | nucleus | 27.44 | 26.58 |
| Zm00001d049464_P001 | Maize | nucleus | 31.63 | 26.05 |
| Os08t0178800-01 | Rice | nucleus | 31.16 | 23.84 |
| VIT_12s0059g02510.t01 | Wine grape | nucleus | 13.95 | 23.62 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 37.67 | 22.56 |
| VIT_09s0054g00530.t01 | Wine grape | cytosol, nucleus, plastid | 20.0 | 16.54 |
Protein Annotations
| ArrayExpress:VIT_00s0203g00210 | EMBL:FN596764 | EnsemblPlants:VIT_00s0203g00210.t01 | EnsemblPlantsGene:VIT_00s0203g00210 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 | PFscan:PS50119 | ProteinID:CCB62765 | ProteinID:CCB62765.1 | SEG:seg |
| SMART:SM00336 | TIGR:TC58062 | UniParc:UPI00015CE26A | UniProt:F6I747 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrUn:-:12064112..12065009
Molecular Weight (calculated)
23472.9 Da
IEP (calculated)
4.382
GRAVY (calculated)
-0.719
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVCELCNSP AVIYCDSDQA SLCCDCDAKV HSANFLVAKH SRTLLCHVCQ SPTPWNGSGP KLGSTISVCQ RCVNRSRTVN ETPSTDEDED EEGEEDGEDD
101: GDDENDEENQ VVPWSSTPPP PISCSSASEE ESSSRFCNGE EGPSDSKSAS SLKPMRQQSS FRPTSQVRLF SPSLRTISMS IKFPQIPIYS TSQNDLGRSV
201: SPPAHNVRIF MKGNE
101: GDDENDEENQ VVPWSSTPPP PISCSSASEE ESSSRFCNGE EGPSDSKSAS SLKPMRQQSS FRPTSQVRLF SPSLRTISMS IKFPQIPIYS TSQNDLGRSV
201: SPPAHNVRIF MKGNE
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.