Factsheet for VIT_12s0134g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25450	Soybean	cytosol, nucleus, plastid	26.42	45.66
Solyc02g079430.2.1	Tomato	nucleus	28.09	45.41
KRH26865	Soybean	nucleus	33.44	45.25
Solyc12g005660.1.1	Tomato	cytosol, nucleus, plastid	30.43	45.05
KRH22488	Soybean	nucleus	33.11	44.8
KRH56068	Soybean	cytosol, nucleus, plastid	26.42	44.63
PGSC0003DMT400035751	Potato	cytosol, nucleus, plastid	29.43	42.72
GSMUA_Achr8P07440_001	Banana	nucleus	25.75	41.18
PGSC0003DMT400057529	Potato	nucleus	26.09	41.05
Solyc07g053140.2.1	Tomato	cytosol, nucleus, plastid	34.11	39.69
VIT_00s0347g00030.t01	Wine grape	nucleus	28.09	39.62
VIT_00s0203g00210.t01	Wine grape	nucleus	28.43	39.53
GSMUA_Achr3P22980_001	Banana	cytosol, nucleus, plastid	27.09	38.94
PGSC0003DMT400067337	Potato	nucleus	33.44	38.91
VIT_19s0014g03960.t01	Wine grape	nucleus	37.12	37.25
EES14650	Sorghum	nucleus	29.1	32.1
Zm00001d049464_P001	Maize	nucleus	27.76	31.8
Zm00001d024213_P001	Maize	nucleus	27.09	31.15
Os08t0178800-01	Rice	nucleus	29.1	30.96
GSMUA_Achr11P...	Banana	nucleus	21.74	29.28
GSMUA_Achr5P26340_001	Banana	nucleus	31.44	26.18
VIT_12s0059g02510.t01	Wine grape	nucleus	10.37	24.41
VIT_09s0054g00530.t01	Wine grape	cytosol, nucleus, plastid	15.05	17.31

Protein Annotations

EntrezGene:100252747	wikigene:100252747	MapMan:35.2	EMBL:AM446421	ProteinID:CAN67529	ProteinID:CAN67529.1
ProteinID:CCB44746	ProteinID:CCB44746.1	UniProt:F6GXR0	EMBL:FN594966	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	EntrezGene:LOC100252747
wikigene:LOC100252747	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31717	PANTHER:PTHR31717:SF26	SMART:SM00336
UniParc:UPI000198459C	ArrayExpress:VIT_12s0134g00400	EnsemblPlantsGene:VIT_12s0134g00400	EnsemblPlants:VIT_12s0134g00400.t01	RefSeq:XP_002272924	RefSeq:XP_002272924.1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:8048609..8050090

Molecular Weight (calculated)

32308.2 Da

IEP (calculated)

4.057

GRAVY (calculated)

-0.855

Length

299 amino acids

Sequence
(BLAST)

001: MKGCELCGCP ARMYCESDQA SLCWDCDAKV HGANFLVARH SRSLLCHVCR SPTPWRASGA KLGHTVSVCE RCVDGCGGRK CGGAAEESEG GNDDEVGMED
101: DDLDEDDEYD DDDDVEDEEE EEEEDDDFGG DDEDGDNQVV PWSSTPPPPE ASSSSSEESL NSFSSGNRDV PGSFTMLSLK RMRETASDLR SQDDFNRPSS
201: QPNYASARAA AARSAADDGE AISEDALRPF KDRRIEQNRP VQPQAGSRTA EIVDSLNRLH NQDITSGSDA SSIIAGICNL SKQSGAVDLD CSSSRSRRI

Best Arabidopsis Sequence Match ( AT4G27310.1 )
(BLAST)

001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV

Arabidopsis Description

BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.