Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057529 | Potato | nucleus | 66.49 | 64.74 |
| Solyc10g006750.2.1 | Tomato | nucleus | 27.03 | 48.08 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 36.22 | 38.73 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 36.76 | 38.42 |
| KRH26865 | Soybean | nucleus | 42.16 | 35.29 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 38.38 | 35.15 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 39.46 | 35.1 |
| KRH22488 | Soybean | nucleus | 40.0 | 33.48 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 31.89 | 31.55 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 41.08 | 29.57 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 45.41 | 28.09 |
| Solyc12g005750.1.1 | Tomato | cytosol | 16.22 | 27.52 |
| Zm00001d024213_P001 | Maize | nucleus | 35.68 | 25.38 |
| GSMUA_Achr11P... | Banana | nucleus | 30.27 | 25.23 |
| Zm00001d049464_P001 | Maize | nucleus | 35.14 | 24.9 |
| Solyc07g052620.1.1 | Tomato | nucleus | 17.3 | 24.62 |
| Os08t0178800-01 | Rice | nucleus | 37.3 | 24.56 |
| EES14650 | Sorghum | nucleus | 33.51 | 22.88 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 38.92 | 20.06 |
| Solyc06g063280.1.1 | Tomato | nucleus | 20.54 | 14.56 |
Protein Annotations
| EnsemblPlants:Solyc02g079430.2.1 | EnsemblPlantsGene:Solyc02g079430.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 |
| PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | UniParc:UPI000276887E | UniProt:K4B9G6 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:43996568..43997652
Molecular Weight (calculated)
20725.2 Da
IEP (calculated)
4.489
GRAVY (calculated)
-1.034
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKCELCSSI ARVYCESDQA SLCWDCDARV HTANFLVAKH SRILLCNSCQ SLTPWTGSGS KLGPTVSVCQ KCFHRNNNDG ADQHLNDHND TEEEEDDDDD
101: TEEDEDDGSS DGDNQVVPLS SSTSDQPNPP SLTSSSSSSE DSTNRFNRRS IIGFSPNRTE ENIQSHYCGI TRPKEKIERS SWRWR
101: TEEDEDDGSS DGDNQVVPLS SSTSDQPNPP SLTSSSSSSE DSTNRFNRRS IIGFSPNRTE ENIQSHYCGI TRPKEKIERS SWRWR
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Arabidopsis Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.