Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067337 | Potato | nucleus | 84.05 | 84.05 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 36.58 | 46.53 |
| Solyc10g006750.2.1 | Tomato | nucleus | 17.9 | 44.23 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 28.79 | 42.77 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 28.79 | 41.81 |
| Solyc02g079430.2.1 | Tomato | nucleus | 29.57 | 41.08 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 27.24 | 37.43 |
| KRH26865 | Soybean | nucleus | 29.57 | 34.39 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 39.69 | 34.11 |
| KRH22488 | Soybean | nucleus | 29.18 | 33.94 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 26.85 | 33.17 |
| Zm00001d024213_P001 | Maize | nucleus | 28.02 | 27.69 |
| Solyc12g005750.1.1 | Tomato | cytosol | 11.67 | 27.52 |
| GSMUA_Achr11P... | Banana | nucleus | 23.35 | 27.03 |
| EES14650 | Sorghum | nucleus | 28.02 | 26.57 |
| Zm00001d049464_P001 | Maize | nucleus | 25.68 | 25.29 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 35.02 | 25.07 |
| Solyc07g052620.1.1 | Tomato | nucleus | 12.45 | 24.62 |
| Os08t0178800-01 | Rice | nucleus | 24.9 | 22.78 |
| Solyc06g063280.1.1 | Tomato | nucleus | 16.73 | 16.48 |
Protein Annotations
| EnsemblPlants:Solyc07g053140.2.1 | EnsemblPlantsGene:Solyc07g053140.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | ncoils:Coil | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | UniParc:UPI000276BC26 |
| UniProt:K4CFL2 | MapMan:15.5.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:61593135..61594431
Molecular Weight (calculated)
28190.0 Da
IEP (calculated)
4.313
GRAVY (calculated)
-0.840
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNCELCTGL ARMYCESDNA SLCWDCDAKV HSANFLAARH SRSLLCQVCQ SPTAWSAAGA KLGKTVSVCD KCVDGYYHRD GVEEMEESES VNDEESDTED
101: EETDYEEDED EIDSGDIQVV PWSNTTPPPP ASSSSSEDSS NGCRNVSSKR MREADPDLQS DDDSGSSSCQ RKVHISPAMD ADGGDDAAAS VDSYSSKMRT
201: PVKIQRTDRL TAPRCTPVIE FIRRNNRQRM NSGAAIAELC RLNHESRTTD LKSSETS
101: EETDYEEDED EIDSGDIQVV PWSNTTPPPP ASSSSSEDSS NGCRNVSSKR MREADPDLQS DDDSGSSSCQ RKVHISPAMD ADGGDDAAAS VDSYSSKMRT
201: PVKIQRTDRL TAPRCTPVIE FIRRNNRQRM NSGAAIAELC RLNHESRTTD LKSSETS
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.