CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22488	Soybean	nucleus	80.09	80.09
KRH56068	Soybean	cytosol, nucleus, plastid	38.01	47.46
KRH25450	Soybean	cytosol, nucleus, plastid	35.75	45.66
KRH10724	Soybean	cytosol, nucleus, plastid	30.77	44.74
KRH21598	Soybean	cytosol, nucleus, plastid	30.77	44.16
PGSC0003DMT400057529	Potato	nucleus	36.65	42.63
Solyc02g079430.2.1	Tomato	nucleus	35.29	42.16
GSMUA_Achr8P07440_001	Banana	nucleus	31.67	37.43
GSMUA_Achr3P22980_001	Banana	cytosol, nucleus, plastid	33.48	35.58
PGSC0003DMT400035751	Potato	cytosol, nucleus, plastid	31.67	33.98
VIT_12s0134g00400.t01	Wine grape	nucleus	45.25	33.44
Solyc12g005660.1.1	Tomato	cytosol, nucleus, plastid	30.32	33.17
KRH55436	Soybean	nucleus	29.86	30.56
Solyc07g053140.2.1	Tomato	cytosol, nucleus, plastid	34.39	29.57
Zm00001d049464_P001	Maize	nucleus	34.39	29.12
PGSC0003DMT400067337	Potato	nucleus	33.03	28.4
EES14650	Sorghum	nucleus	33.03	26.94
Os08t0178800-01	Rice	nucleus	33.94	26.69
Zm00001d024213_P001	Maize	nucleus	30.77	26.15
GSMUA_Achr11P...	Banana	nucleus	25.79	25.68
KRH26836	Soybean	cytosol, nucleus, plastid	14.03	25.0
KRH22520	Soybean	cytosol, nucleus, plastid	13.57	24.19
GSMUA_Achr5P26340_001	Banana	nucleus	35.29	21.73
KRH44613	Soybean	nucleus	22.17	20.33
KRH47291	Soybean	nucleus	21.27	19.34

Protein Annotations

EntrezGene:100809520	MapMan:35.2	EMBL:ACUP02007753	EnsemblPlantsGene:GLYMA_12G198400	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	UniProt:I1LUA3	InterPro:IPR000315
EnsemblPlants:KRH26865	ProteinID:KRH26865	ProteinID:KRH26865.1	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31717
PANTHER:PTHR31717:SF26	SMART:SM00336	UniParc:UPI000233C43A	InterPro:Znf_B-box	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:35970558..35971945

Molecular Weight (calculated)

24356.2 Da

IEP (calculated)

4.125

GRAVY (calculated)

-0.971

Length

221 amino acids

Sequence
(BLAST)

001: MKNCELCKLP ARTFCESDQA SLCWDCDAKV HGANFLVARH TRTLLCHACQ SLTPWKASGS ALGNTVSLCQ SCAGGTTEQG PESQGGNDDD DIDTDDEDDY
101: DDDGESEENE VAADEEDGDN QVVPWSSEPP PPSPSSSSSE ESISRCNNVD EVSTTLKRRR ENDDFQGSNS NNWKCERSEV DRGCWLARLR RRTADDVAVE
201: RRRARAAFPY GCCDDRASED V

Best Arabidopsis Sequence Match ( AT4G27310.1 )
(BLAST)

001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV

Arabidopsis Description

BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.