Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g006750.2.1 | Tomato | nucleus | 19.37 | 41.35 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 22.97 | 37.23 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 29.28 | 34.76 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 23.42 | 34.21 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 25.68 | 32.95 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 30.63 | 32.69 |
| CDY42453 | Canola | cytosol | 26.13 | 32.04 |
| Bra002986.1-P | Field mustard | cytosol | 26.13 | 31.87 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 25.23 | 31.64 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 21.62 | 31.17 |
| Solyc02g079430.2.1 | Tomato | nucleus | 25.23 | 30.27 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 27.03 | 29.85 |
| Bra019058.1-P | Field mustard | cytosol | 27.48 | 29.76 |
| PGSC0003DMT400057529 | Potato | nucleus | 25.23 | 29.47 |
| CDY18333 | Canola | nucleus | 23.42 | 28.89 |
| GSMUA_Achr9P13880_001 | Banana | nucleus | 18.47 | 27.89 |
| VIT_00s0347g00030.t01 | Wine grape | nucleus | 26.58 | 27.83 |
| KRH22488 | Soybean | nucleus | 27.48 | 27.6 |
| VIT_00s0203g00210.t01 | Wine grape | nucleus | 26.58 | 27.44 |
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 27.48 | 27.35 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 24.77 | 26.7 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 27.48 | 26.52 |
| AT5G54470.1 | Thale cress | cytosol | 25.68 | 26.51 |
| PGSC0003DMT400064406 | Potato | nucleus | 27.03 | 25.86 |
| KRH26865 | Soybean | nucleus | 25.68 | 25.79 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 23.42 | 25.74 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 27.93 | 25.73 |
| KRH55436 | Soybean | nucleus | 23.87 | 24.54 |
| EES14650 | Sorghum | nucleus | 29.28 | 23.99 |
| Zm00001d049464_P001 | Maize | nucleus | 27.93 | 23.75 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 27.03 | 23.35 |
| PGSC0003DMT400067337 | Potato | nucleus | 26.58 | 22.96 |
| Zm00001d024213_P001 | Maize | nucleus | 26.58 | 22.69 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 29.28 | 21.74 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 35.14 | 21.73 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 28.83 | 21.48 |
| Os08t0178800-01 | Rice | nucleus | 27.03 | 21.35 |
| GSMUA_Achr6P03790_001 | Banana | nucleus | 18.02 | 17.86 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 18.02 | 16.33 |
| GSMUA_Achr1P10450_001 | Banana | cytosol | 17.12 | 15.9 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus, plastid | 19.37 | 14.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P25910_001 | EnsemblPlants:GSMUA_Achr11T25910_001 | EnsemblPlantsGene:GSMUA_Achr11G25910_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | SEG:seg | SMART:SM00336 | UniParc:UPI0002961BD6 | UniProt:M0RVH1 | MapMan:35.2 |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G25910_001]
Coordinates
chr11:+:24890929..24892218
Molecular Weight (calculated)
23821.1 Da
IEP (calculated)
8.732
GRAVY (calculated)
-0.518
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPRRGGIRV KQCELCVRPA RIHCESDEAS LCWECDAKVH GANFLVARHS RCLLCRSCQS PTPWRAEGAR LRPTFSVVPW SLTPPPAASS SNSSEGEEEP
101: GRIGRIGNGG GFLKRMRGNA DLSVSQDDLA CSSSLPSYLP PSPAPSPAAS ATMAAAAKDE ASSCASAFRS SKDRKRPALR PEPASDTDTA GAMLDVRVHG
201: RVDLMTRLLS SSDPNRYKNL EG
101: GRIGRIGNGG GFLKRMRGNA DLSVSQDDLA CSSSLPSYLP PSPAPSPAAS ATMAAAAKDE ASSCASAFRS SKDRKRPALR PEPASDTDTA GAMLDVRVHG
201: RVDLMTRLLS SSDPNRYKNL EG
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.