Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019058.1-P | Field mustard | cytosol | 53.81 | 58.54 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 53.36 | 51.74 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 49.78 | 46.06 |
| AT5G54470.1 | Thale cress | cytosol | 42.6 | 44.19 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 34.98 | 37.5 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 27.8 | 33.16 |
| Zm00001d024213_P001 | Maize | nucleus | 32.74 | 28.08 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 37.22 | 27.85 |
| GSMUA_Achr11P... | Banana | nucleus | 27.35 | 27.48 |
| Os08t0178800-01 | Rice | nucleus | 34.53 | 27.4 |
| EES14650 | Sorghum | nucleus | 33.18 | 27.31 |
| Zm00001d049464_P001 | Maize | nucleus | 31.84 | 27.2 |
| AT3G21890.1 | Thale cress | cytosol | 13.45 | 24.79 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 39.91 | 24.79 |
| AT4G15248.1 | Thale cress | cytosol | 13.0 | 24.79 |
| AT3G21150.1 | Thale cress | cytosol | 17.49 | 17.33 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828839 | UniProt:A0A178V4D3 | ProteinID:AEE85323.1 | ArrayExpress:AT4G27310 | EnsemblPlantsGene:AT4G27310 |
| RefSeq:AT4G27310 | TAIR:AT4G27310 | RefSeq:AT4G27310-TAIR-G | EnsemblPlants:AT4G27310.1 | TAIR:AT4G27310.1 | ProteinID:CAA19725.1 |
| ProteinID:CAB79586.1 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000315 | RefSeq:NP_194461.1 | UniProt:O81834 | ProteinID:OAP01059.1 |
| PFAM:PF00643 | PO:PO:0000293 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 | SMART:SM00336 | UniParc:UPI000004B2AD |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
Coordinates
chr4:+:13675537..13677055
Molecular Weight (calculated)
24135.9 Da
IEP (calculated)
3.987
GRAVY (calculated)
-0.863
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.